Genomic data from the Chinese Rhesus macaque (Macaca mulatta lasiota).
Dataset type: Genomic
Data released on July 06, 2011
Bai Y; Chen J; Chen R; Cooper DN; Du H; Fang X; Hu H; Huang Y; Huang Z; Le L; Li B; Li C; Li J; Li Q; Li Y; Ling F; Meng Y; Stenson PD; Thompson JR; van Gool AJ; Wang J; Wang T; Wang Z; Wei L; Yan G; Zhang G; Zhang P; Zhang Y; Zhuo M; An N; Ball EV; Liu X; Huang Q; Zhang Y; Fan W; Zhang X; Li Y; Wang W; Katze MG; Su B; Nielsen R; Yang H; Wang J; Wang X; Wang J (2011): Genomic data from the Chinese Rhesus macaque (Macaca mulatta lasiota). GigaScience. http://dx.doi.org/10.5524/100002
The Chinese rhesus macaque (Macaca mulatta lasiota) is a subspecies of rhesus macaques that mainly resides in western and central China. Due to their anatomical and physiological similarity with human beings, macaques are a common laboratory model. Also, as several macaques species have been sequenced, such as the Indian rhesus macaque and the crab-eating macaque, examination of the Chinese rhesus macaque (CR) genome offers interesting insights into the entire Macaca genus. The DNA sample for data sequencing and analyses was obtained from a five-year old female CR from southwestern China. The genome was sequenced on the IlluminaGAIIx platform, from which 142-Gb of high-quality sequence, representing 47-fold genome coverage for CR. The total size of the assembled CR genome was about 2.84 Gb, providing 47-fold on average. Scaffolds were assigned to the chromosomes according to the synteny displayed with the Indian rhesus macaque and human genome sequences. About 97% of the CR scaffolds could be placed onto chromosomes.
Read the peer-reviewed publication(s):
Yan, G., Zhang, G., Fang, X., Zhang, Y., Li, C., Ling, F., … Wang, J. (2011). Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nature Biotechnology, 29(11), 1019–1023. doi:10.1038/nbt.1992
Accessions (data included in GigaDB):
Accessions (data not in GigaDB):