The giant panda (Ailuropoda melanoleuca) is considered a symbol of China and is a much loved animal all around the world. It is also one of the world’s most endangered species, making it a flagship species for conservation efforts. As the first fully sequenced Ursidae and the second fully sequenced carnivore after the dog, the whole genome sequence and annotation data provide an unparalleled amount of information to aid in understanding the genetic and biological underpinnings of this unique species, and will help contribute to disease control and conservation efforts. In 2008, BGI completed a first draft of the genome sequence of a three-year old female giant panda named Jingjing, who was used as a model for the 2008 Olympics in Beijing, China (doi: 10.1038/nature08696). Using second-generation Illumina GA sequencing data, the first de novo genome assembly was created using short-read sequencing technology. Here you will find the giant panda genome sequence assembly as well as annotation information, such as gene structure and function, non-coding RNAs, and repeat elements. Also presented are polymorphism information detected in the diploid genome, including SNPs, indels, and structural variations (SVs). The assembly was done using SOAPdenovo software and the panda genome data is visualized via MapView, which is powered by the Google Web Toolkit.

Additional details

Read the peer-reviewed publication(s):

Li, R., Fan, W., Tian, G., Zhu, H., He, L., Cai, J., … Bai, Y. (2009). The sequence and de novo assembly of the giant panda genome. Nature, 463(7279), 311–317. doi:10.1038/nature08696 (PubMed: 20010809)

Genome browser:

http://panda.genomics.org.cn/

Accessions (data generated as part of this study):

SRA: SRP000962
GENBANK: ACTA00000000
BioProject: PRJNA38683

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SRS0043819646Giant pandagiant pandaAiluropoda melanoleuca Age:3
Description:We sequenced a 3-year old female panda...
Sex:female
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Displaying 1-1 of 1 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
SAMPLE:SRS004381Genome sequenceFASTQ7.5 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ7.51 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ256.61 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ275.16 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ268.85 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ280.63 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ336 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ340.48 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ81.25 MB2011-07-06
SAMPLE:SRS004381Genome sequenceFASTQ89.94 MB2011-07-06
Displaying 1-10 of 792 File(s).
Date Action
November 4, 2015 File 080620_I330_FC304NVAAXX_L3_PAfwDADHAAPE_1.fq.clean.gz updated