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Data released on November 12, 2011

Genome data from Jerdon’s jumping ant (Harpegnathos saltator).

Berger, S, L; Bonasio, R; Donahue, G; Fang, X; Huang, Z; Li, C; Li, Q; Liebig, J; Mutti, N, S; Qin, N; Reinberg, D; Wang, J; Yang, P; Ye, C; Zhang, G; Zhang, P (2011): Genome data from Jerdon’s jumping ant (Harpegnathos saltator). GigaScience. http://dx.doi.org/10.5524/100019 RIS BibTeX Text

Presented here is the sequenced genome of Jerdon’s jumping ant (Harpegnathos saltator). The jumping ant has a distinct caste and social behavior system, and its genome offers interesting insights into epigenetics in aging and behavior. The Illumina Genome Analyzer platform was used to sequence a genomic library, obtaining more than 100-fold coverage of the estimated 330 Mb genome. The draft genomic assembly reached a scaffold N50 size of ~600 kb and covers more than 90% of the ant’s genome.

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Related manuscripts:

doi:10.1126/science.1192428 (PubMed: 20798317)

Accessions (data included in GigaDB):

GENBANK: AEAC00000000
BioProject: PRJNA50203

Accessions (data not in GigaDB):

SRA: SRP002786
GEO: GSE22680

Genomic

http://gigadb.org/images/data/cropped/100019_Harpegnathos_saltator.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Hsal610380Jerdon's jumping antJerdon's jumping antHarpegnathos saltator
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
HsalCoding sequenceFASTA6.3 MB2011-11-12
HsalSequence assemblyFASTA78.4 MB2011-11-12
HsalAnnotationGFF1.07 MB2011-11-12
HsalProtein sequenceFASTA4.08 MB2011-11-12
HsalReadmeTEXT0.23 KB2011-11-12
Displaying 1-5 of 5 File(s).

History:

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