Genomic data from Chinese cabbage (Brassica rapa).
Dataset type: Genomic
Data released on November 12, 2011
Wang X; Wang H; Wang J; Sun R; Wu J; Liu S; Bai Y; Mun J; Bancroft I; Cheng F; Huang S; Li X; Hua W; Wang J; Wang X; Freeling M; Pires JC; Paterson AH; Chalhoub B; Wang B; Hayward A; Sharpe AG; Park B; Weisshaar B; Liu B; Li B; Liu B; Tong C; Song C; Duran C; Peng C; Geng C; Koh C; Lin C; Edwards D; Mu D; Shen D; Soumpourou E; Li F; Fraser F; Conant G; Lassalle G; King GJ; Bonnema G; Tang H; Wang H; Belcram H; Zhou H; Hirakawa H; Abe H; Guo H; Wang H; Jin H; Parkin IAP; Batley J; Kim JS; Just J; Li J; Xu J; Deng J; Kim JA; Li J; Yu J; Meng J; Wang J; Min J; Poulain J; Wang J; Hatakeyama K; Wu K; Wang L; Fang L; Trick M; Links MG; Zhao M; Jin M; Ramchiary N; Drou N; Berkman PJ; Cai Q; Huang Q; Li R; Tabata S; Cheng S; Zhang S; Zhang S; Huang S; Sato S; Sun S; Kwon SJ; Choi SR; Lee TH; Fan W; Zhao X; Tan X; Xu X; Wang Y; Qiu Y; Yin Y; Li Y; Du Y; Liao Y; Lim Y; Narusaka Y; Wang Y; Wang Z; Li Z; Wang Z; Xiong Z; Zhang Z; Brassica rapa Genome Sequencing Project Consortium (2011): Genomic data from Chinese cabbage (Brassica rapa). GigaScience. http://dx.doi.org/10.5524/100021
Available here is genomic data for the polyploid plant Brassica rapa ssp. pekinensis line Chiifu-401-42, a Chinese cabbage. As there are several oil and vegetable crop species in the Brassica family, this genome is of great agricultural relevance. It also provides an important resource for studying the evolution of polyploid genomes. The Brassica rapa Genome Sequencing Project Consortium assembled a 283.8 Mb genome estimated to cover >98% of the gene space. Using 72X coverage of paired short read sequences generated by Illumina GA II technology and 199,452 BAC-end sequences, 159 super scaffolds were produced, representing 90% of the assembled sequences with an N50 scaffold size of 1.97 Mb. Using genetic mapping of 1,427 markers in B. rapa, ten pseudo chromosomes that included 90% of the assembly were produced. A total of 41,174 protein-coding genes in the B. rapa genome were modeled, and the genome was found to have undergone genome triplication.
Additional details
Read the peer-reviewed publication(s):
(PubMed: 21873998)
Accessions (data generated as part of this study):
GENBANK:
AENI00000000
| Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
|---|---|---|---|---|---|
| Cabbage | 51351 | Chinese cabbage | Chinese cabbage | Brassica rapa subsp. pekinensis |
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