Genomic data from the Pacific oyster (Crassostrea gigas).
Dataset type: Genomic, Transcriptomic
Data released on July 12, 2012
Fang X; Li L; Luo R; Xu F; Wang X; Zhu Y; Yang L; Huang Z (2012): Genomic data from the Pacific oyster (Crassostrea gigas). GigaScience. http://dx.doi.org/10.5524/100030
The Pacific oyster (Crassostrea gigas) belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. In this study, DNA was extracted from an oyster derived from four generations of full-sib mating. Short-reads and a fosmid-pooling strategy were used for sequencing and assembly of the oyster genome. DNA extracted from the inbred oyster and another wild oyster was used for resequencing analysis. Finally, RNA-seq and small RNA from different organs at different developmental stages were extracted for developmental studies.
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Accessions (data generated as part of this study):
|Sample ID||Taxonomic ID||Common Name||Genbank Name||Scientific Name||Sample Attributes|
|oyster||29159||Pacific oyster||Pacific oyster||Crassostrea gigas|