Macrotermes natalensis gut metagenome assembly data.
Dataset type: Metagenomic
Data released on September 01, 2014
Poulsen M; Hu H; Li C; Boomsma JJ; Zhang G (2014): Macrotermes natalensis gut metagenome assembly data. GigaScience Database. http://dx.doi.org/10.5524/100058
Background: Most termites rely on gut microbial symbionts to decompose organic matter. During the process of Macrotermitinae domesticating Termitomyces fungi, it led to the loss of their ancestral gut symbionts and the acquisition a novel gut microbiome, but the complementary roles of the major components of this obligate symbiosis remain enigmatic. Here we provide sequence assemblies for the gut microbiome of 3 distinct castes within the a single colony of termite.
Sampling: The gut DNA were extract from major workers, minor soldiers and the queen from M. natalensis colony Mn117 (S24°40’30.5” E28°47’50.4”, elevation 1045 m). In workers and soldiers, duplicate extractions were performed on 2 x 50 guts pulled out of individuals aseptically, which were pooled after extraction. The queen gut DNA was from a entire queen gut dissected out aseptically.
Finding: The three gut microbiomes were assembled to 446Mb (>1,200,000 genes), 337Mb (>900,000 genes), and 33Mb (>50,000 genes) for workers, soldiers and the queen, respectively.
Additional details
Read the peer-reviewed publication(s):
Related datasets:
doi:10.5524/100058 IsPartOf doi:10.5524/100055
doi:10.5524/100058 IsSupplementedBy doi:10.5524/100056
doi:10.5524/100058 IsSupplementedBy doi:10.5524/100057
Accessions (data generated as part of this study):
SRA:
SRP020010
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
SAMN01991224 | 433724 | termite gut metagenome | termite gut metagenome | Altitude:1045 Description:termite queen metagenome Geographic location (country and/or sea,region):So... ... + | |
SAMN01991225 | 433724 | termite gut metagenome | termite gut metagenome | Altitude:1045 Description:termite worker metagenome Geographic location (country and/or sea,region):So... ... + | |
SAMN01991226 | 433724 | termite gut metagenome | termite gut metagenome | Altitude:1045 Description:termite soldier metagenome Geographic location (country and/or sea,region):So... ... + |