Assemblathon 2 assemblies.
Dataset type: Genomic
Data released on June 24, 2013
Bradnam KR; Fass JN; Alexandrov A; Baranay P; Bechner M; Birol I; Boisvert S; Chapman JA; Chapuis G; Chikhi R; Chitsaz H; Chou W; Corbeil J; Del Fabbro C; Docking TRR; Durbin R; Earl D; Emrich S; Fedotov P; Fonseca NA; Ganapathy G; Gibbs RA; Gnerre S; Godzaridis Ã; Goldstein S; Haimel M; Hall G; Haussler D; Hiatt JB; Ho I; Howard JT; Hunt M; Jackman SD; Jaffe DB; Jarvis ED; Jiang H; Kazakov S; Kersey PJ; Kitzman JO; Knight JR; Koren S; Lam T; Lavenier D; Laviolette F; Li Y; Li Z; Liu B; Liu Y; Luo R; MacCallum I; MacManes MD; Maillet N; Melnikov S; Naquin D; Ning Z; Otto TD; Paten B; Paulo OS; Phillippy AM; Pina-Martins F; Place M; Przybylski D; Qin X; Qu C; Ribeiro FJ; Richards S; Rokhsar DS; Ruby JG; Scalabrin S; Schatz MC; Schwartz DC; Sergushichev A; Sharpe T; Shaw TI; Shendure J; Shi Y; Simpson JT; Song H; Tsarev F; Vezzi F; Vicedomini R; Vieira BM; Wang J; Worley KC; Yin S; Yiu S; Yuan J; Zhang G; Zhang H; Zhou S; Korf IF (2013): Assemblathon 2 assemblies. GigaScience Database. http://dx.doi.org/10.5524/100060
Assemblathon 2 is a genome assembly contest where participating teams attempted to assemble genomes for three vertebrate species using a mixture of next-generation sequencing data. In total, 43 assemblies were submitted for three species (15 for bird, 16 for fish, and 12 for snake). These assemblies were assessed using a wide variety of statistical approaches as well as using experimental data from Fosmid sequences and optical maps.
Additional details
Read the peer-reviewed publication(s):
(PubMed: 23870653)
Related datasets:
doi:10.5524/100060 IsSupplementedBy doi:10.5524/100061
doi:10.5524/100060 IsSupplementedBy doi:10.5524/100062
Accessions (data generated as part of this study):
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
ERS218597 | 499168 | Boa constrictor constrictor | Boa constrictor constrictor | ||
ERS222880 | 13146 | Melopsittacus undulatus | budgerigar | Melopsittacus undulatus | Cell type:blood Sex:male [PATO:0000384] Common name:budgerigar |
SRS140425 | 106582 | Maylandia zebra | zebra mbuna | Maylandia zebra | Sex:male [PATO:0000384] Tissue:muscle and heart Common name:zebra mbuna fish ... + |