Help Login Create account

Data released on June 24, 2013

CEGMA gene predictions for Assemblathon 2 entries.

Bradnam, K, R; Fass, J, N; Korf, I, K (2013): CEGMA gene predictions for Assemblathon 2 entries. GigaScience Database. http://dx.doi.org/10.5524/100061 RIS BibTeX Text

Assemblathon 2 genome assemblies were assessed for their genic content. This was done by using published tool (CEGMA) that looks for the presence of nearly full-length genes within a single scaffold sequence. Such genes must match HMMs made from a set of 458 highlyconserved genes that are presumed to be conserved in all eukaryotes.

Contact Submitter

Related manuscripts:

doi:10.1186/2047-217X-2-10 (PubMed: 23870653)

Related datasets:

doi:10.5524/100061 IsSupplementedBy doi:10.5524/100060
doi:10.5524/100061 IsSupplementedBy doi:10.5524/100062

Accessions (data included in GigaDB):

SRA: ERP002324
SRA: SRA026860
SRA: ERP002294

Genomic

/images/uploads/image_upload/Images_49.png

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
ERS218597499168Boa constrictor constrictor Boa constrictor constrictor
ERS22288013146Melopsittacus undulatusbudgerigarMelopsittacus undulatus Cell type:blood
Sex:male
Common name:budgerigar
SRS140425106582Maylandia zebrazebra mbunaMaylandia zebra Sex:male
Tissue type:muscle and heart
Common name:zebra mbuna fish
...
+
Displaying 1-3 of 3 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
ERS222880, SRS140425, ERS218597Genome sequenceTAR79.41 MB2013-06-21
ReadmeTEXT0.75 KB2013-06-21
Displaying 1-2 of 2 File(s).

Other datasets you might like: