Assembled Fosmid sequences used for assessment of Assemblathon 2 entries.

Dataset type: Genomic
Data released on June 24, 2013

Fass JN; Korf IK; Bradnam KR; Jarvis ED; Howard JT; Shendure J; Hiatt J; Kitzman JO (2013): Assembled Fosmid sequences used for assessment of Assemblathon 2 entries. GigaScience Database. http://dx.doi.org/10.5524/100062

DOI10.5524/100062

Assemblathon 2 genome assemblies for bird and snake were assessed using high-confidence regions of assembled Fosmid sequences. These validated Fosmid regions (VFRs) were included as an additional file as part of the Assemblathon 2 manuscript. This file contains the complete assembled Fosmid sequences for both species (47 sequences for bird, 29 for snake).

Additional details

Read the peer-reviewed publication(s):

(PubMed: 23870653)

Related datasets:

doi:10.5524/100062 IsSupplementTo doi:10.5524/100060
doi:10.5524/100062 IsSupplementTo doi:10.5524/100061

Accessions (data generated as part of this study):

SRA: ERP002324
SRA: ERP002294





Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
ERS218597499168Boa constrictor constrictor Boa constrictor constrictor
ERS22288013146Melopsittacus undulatusbudgerigarMelopsittacus undulatus Cell type:blood
Sex:male [PATO:0000384]
Common name:budgerigar
Displaying 1-2 of 2 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
ERS218597, ERS222880Sequence assemblyFASTA1.45 MB2013-06-21
ReadmeTEXT0.2 KB2013-06-21
Displaying 1-2 of 2 File(s).
Date Action