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Data released on October 28, 2013

Transcriptomic, DNA barcoding, and micro-CT imaging data from an advanced taxonomic description of a novel centipede species (Eupolybothrus cavernicolus Komerički & Stoev, sp. n.).

Akkari, N; Hostens, J; Komerički, A; Liu, S; Penev, L; Porco, D; Stoev, P; Weigand, A, M; Zhou, X (2013): Transcriptomic, DNA barcoding, and micro-CT imaging data from an advanced taxonomic description of a novel centipede species (Eupolybothrus cavernicolus Komerički & Stoev, sp. n.). GigaScience. http://dx.doi.org/10.5524/100063 RIS BibTeX Text

The species description of a cave-dwelling centipede , Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae), found in a remote karst region in Knin, Croatia. This is the first eukaryotic species for which, in addition to traditional morphological description, a fully sequenced transcriptome, DNA barcode (i.e., mitochondrial Cytochrome C Oxidase Subunit I gene; COI), and detailed anatomical X-ray microtomography (micro-CT) scan has been provided. This project illustrates a workflow of producing, storing, publishing and disseminating large data sets associated with a description of a new taxon.
This dataset consist of the transcriptomic and annotation data as well as the Micro-CT scans, photographs, scanning electron micrographs (SEM) and video footage of the species.

Contact Submitter

Related manuscripts:

doi:10.3897/BDJ.1.e1013

Accessions (data included in GigaDB):

AE: E-MTAB-1859
ENA: ERP003841
http: //morphosource.org/index.php/Detail/SpecimenDetail/Show/specimen_id/514
http: //www.morphbank.net/Browse/ByImage/?tsn=999021821

Accessions (data not in GigaDB):

BOLD: 10.5883/DS-EUPCAV

Genomic, Transcriptomic, Imaging

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Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Centipede_Holotype1391732Eupolybothrus sp. PS-2013 Eupolybothrus sp. PS-2013 Collection date:40057
Collected by:M. Lukic
Elevation:115
...
+
Centipede_ParatypeA1391732Eupolybothrus sp. PS-2013 Eupolybothrus sp. PS-2013 Elevation:115
Geographic location (country and/or sea,region):Cr...
Life stage:adult
...
+
Centipede_ParatypeB1391732Eupolybothrus sp. PS-2013 Eupolybothrus sp. PS-2013 Collection date:40057
Elevation:115
Geographic location (country and/or sea,region):Cr...
...
+
Centipede_ParatypeE1391732Eupolybothrus sp. PS-2013 Eupolybothrus sp. PS-2013 Collection date:38811
Collected by:M. Lukic
Elevation:115
...
+
Displaying 1-4 of 4 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Centipede_ParatypeEImageTIF1.25 MB2013-10-28
Centipede_HolotypeImageJPG3.38 MB2013-10-28
Centipede_ParatypeEImageTIF3.21 MB2013-10-28
Centipede_ParatypeEImageTIF3.68 MB2013-10-28
Centipede_ParatypeEImageTIF1.25 MB2013-10-28
Centipede_ParatypeEImageTIF2.46 MB2013-10-28
Centipede_ParatypeEImageTIF2.32 MB2013-10-28
Centipede_ParatypeEImageTIF1.25 MB2013-10-28
Centipede_ParatypeEImageTIF3.71 MB2013-10-28
Centipede_ParatypeEImageTIF3.95 MB2013-10-28
Displaying 1-10 of 85 File(s).

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