Genomic and transcriptomic data from the Brandt's bat (Myotis brandtii).
Dataset type: Genomic
Data released on October 31, 2013
Seim I; Fang X; Xiong Z; Lobanov AV; Huang Z; Ma S; Yue Feng Y; Turanov AA; Zhu Y; Lenz TL; Gerashchenko MV; Fan D; Yim SH; Yao X; Jordan D; Xiong Y; Ma Y; Lyapunov AN; Chen G; Kulakova OI; Sun Y; Lee SG; Bronson RT; Moskalev AA; Sunyaev SR; Zhang G; Krogh A; Wang J; Gladyshevb VN (2013): Genomic and transcriptomic data from the Brandt's bat (Myotis brandtii). GigaScience Database. http://dx.doi.org/10.5524/100065
Brandt's bat (Myotis brandtii) is a species of vesper bat in the family Vespertilionidae. It is found throughout most of Europe and parts of Asia. It is known for its extreme longevity quotient, approximately twice that of humans.
A whole-genome shotgun strategy was applied to sequence the genome of an adult male Brandt’s bat (M. brandtii) from the Obvalnaya cave in Russia. We also sequenced liver, kidney and brain transcriptomes of hibernating and summer-active M. brandtii. Approximately 156 Gb (or 78 × ) genome data including 101 Gb (or 51 × ) short insert size reads were generated, resulting in a high-quality assembly with scaffold N50 of 3.1 Mb and contig N50 of 21 kb
Additional details
Read the peer-reviewed publication(s):
(PubMed: 23962925)
Accessions (data generated as part of this study):
SRA:
SRS374114
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
SAMN01801565 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | |
SAMN01814385 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:liver of Myotis brandtii sample1 that hibernated for 2 months Hibernation state:2 mo hibernation Tissue:liver |
SAMN01814386 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:kidney of Myotis brandtii sample1 that hibernated for 2 months Hibernation state:2 mo hibernation Tissue:kidney |
SAMN01814387 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:brain of Myotis brandtii sample1 that hibernated for 2 months Hibernation state:2 mo hibernation Tissue:brain |
SAMN01814388 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:liver of Myotis brandtii sample2 that hibernated for 2 months Hibernation state:2 mo hibernation Tissue:liver |
SAMN01814389 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:kidney of Myotis brandtii sample2 that hibernated for 2 months Hibernation state:2 mo hibernation Tissue:kidney |
SAMN01814390 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:brain of Myotis brandtii sample2 that hibernated for 2 months Hibernation state:2 mo hibernation Tissue:brain |
SAMN01814391 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:liver of summer active Myotis brandtii sample1 Hibernation state:active Tissue:liver |
SAMN01814392 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:kidney of summer active Myotis brandtii sample1 Hibernation state:active Tissue:kidney |
SAMN01814393 | 109478 | Myotis brandtii | Brandt's bat | Myotis brandtii | Comment:liver of summer active Myotis brandtii sample2 Hibernation state:active Tissue:liver |