Help Login Create account

Data released on October 31, 2013

Genomic and transcriptomic data from the Brandt's bat (Myotis brandtii).

Bronson, R, T; Chen, G; Fan, D; Fang, X; Gerashchenko, M, V; Gladyshevb, V, N; Huang, Z; Jordan, D; Krogh, A; Kulakova, O, I; Lee, S, G; Lenz, T, L; Lobanov, A, V; Lyapunov, A, N; Ma, S; Ma, Y; Moskalev, A, A; Seim, I; Sun, Y; Sunyaev, S, R; Turanov, A, A; Wang, J; Xiong, Y; Xiong, Z; Yao, X; Yim, S, H; Yue Feng, Y; Zhang, G; Zhu, Y (2013): Genomic and transcriptomic data from the Brandt's bat (Myotis brandtii). GigaScience Database. http://dx.doi.org/10.5524/100065 RIS BibTeX Text

Brandt's bat (Myotis brandtii) is a species of vesper bat in the family Vespertilionidae. It is found throughout most of Europe and parts of Asia. It is known for its extreme longevity quotient, approximately twice that of humans.
A whole-genome shotgun strategy was applied to sequence the genome of an adult male Brandt’s bat (M. brandtii) from the Obvalnaya cave in Russia. We also sequenced liver, kidney and brain transcriptomes of hibernating and summer-active M. brandtii. Approximately 156 Gb (or 78 × ) genome data including 101 Gb (or 51 × ) short insert size reads were generated, resulting in a high-quality assembly with scaffold N50 of 3.1 Mb and contig N50 of 21 kb

Contact Submitter

Related manuscripts:

doi:10.1038/ncomms3212 (PubMed: 23962925)

Accessions (data included in GigaDB):

SRA: SRS374114

Genomic

http://gigadb.org/images/data/cropped/Myotis_brandti.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SAMN01801565109478Myotis brandtiiBrandt's batMyotis brandtii
SAMN01814385109478Myotis brandtiiBrandt's batMyotis brandtii Comment:liver of Myotis brandtii sample1 that hibernated for 2 months
Hibernation state:2 mo hibernation
Tissue type:liver
SAMN01814386109478Myotis brandtiiBrandt's batMyotis brandtii Comment:kidney of Myotis brandtii sample1 that hibernated for 2 months
Hibernation state:2 mo hibernation
Tissue type:kidney
SAMN01814387109478Myotis brandtiiBrandt's batMyotis brandtii Comment:brain of Myotis brandtii sample1 that hibernated for 2 months
Hibernation state:2 mo hibernation
Tissue type:brain
SAMN01814388109478Myotis brandtiiBrandt's batMyotis brandtii Comment:liver of Myotis brandtii sample2 that hibernated for 2 months
Hibernation state:2 mo hibernation
Tissue type:liver
SAMN01814389109478Myotis brandtiiBrandt's batMyotis brandtii Comment:kidney of Myotis brandtii sample2 that hibernated for 2 months
Hibernation state:2 mo hibernation
Tissue type:kidney
SAMN01814390109478Myotis brandtiiBrandt's batMyotis brandtii Comment:brain of Myotis brandtii sample2 that hibernated for 2 months
Hibernation state:2 mo hibernation
Tissue type:brain
SAMN01814391109478Myotis brandtiiBrandt's batMyotis brandtii Comment:liver of summer active Myotis brandtii sample1
Hibernation state:active
Tissue type:liver
SAMN01814392109478Myotis brandtiiBrandt's batMyotis brandtii Comment:kidney of summer active Myotis brandtii sample1
Hibernation state:active
Tissue type:kidney
SAMN01814393109478Myotis brandtiiBrandt's batMyotis brandtii Comment:liver of summer active Myotis brandtii sample2
Hibernation state:active
Tissue type:liver
Displaying 1-10 of 16 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Coding sequenceFASTA9.9 MB2013-10-15
AnnotationGFF2.24 MB2013-10-15
Protein sequenceFASTA6.53 MB2013-10-15
Sequence assemblyFASTA2.06 GB2013-10-15
Displaying 1-4 of 4 File(s).

History:

+

Other datasets you might like: