Help Login Create account

Data released on October 31, 2013

Genomic data from the Insectivorous bat (Myotis davidii).

Baker, M, L; Bishop-Lilly, K, A; Broder, C, C; Chen, Y; Cowled, C; Crameri, G; Fang, X; Feng, Y; Frey, K, G; Huang, Z; Jiang, X; Marsh, G, A; Ng, J; Shi, Z; Sun, X; Tachedjian, M; Wang, J; Wang, L; Wu, L; Wynne, J, W; Xiao, J; Xiong, Z; Yang, L; Zhang, G; Zhang, Y; Zhao, W; Zhou, P; Zhu, Y (2013): Genomic data from the Insectivorous bat (Myotis davidii). GigaScience Database. http://dx.doi.org/10.5524/100067 RIS BibTeX Text

The microbats constitute the suborder Microchiroptera within the order Chiroptera (bats). They are most often referred to by their scientific name. Other English names are "insectivorous bats", "echolocating bats", "small bats" or "true bats". All these names are somewhat inaccurate, because not all microbats feed on insects, and some of them are larger than small megabats.
We applied a whole genome shotgun strategy and next-generation sequencing technologies using an Illumina HiSeq 2000 platform to sequence the genome of an individual adult male M. davidii. In order to lower the risk of non-randomness, we constructed 26 paired-end libraries sequenced on 26 lanes, with insert sizes of about 250 base pairs (bp), 500 bp, 800 bp, 2 kb, 5 kb, 10 kb and 20 kb. In total, we generated about 237.2 Gb (118.6x coverage) of high quality sequence for the assembly. The genome was de novo assembled by SOAPdenovo. The final contig size and N50 were 1.91 Gb and 13.2 kb, respectively. The total scaffold size and N50 were 2.09 Gb and 3.39 Mb, respectively.

Contact Submitter

Related manuscripts:

doi:10.1126/science.1230835 (PubMed: 23258410)

Accessions (data included in GigaDB):

GEO: GSM1048081
SRA: SRS378033

Genomic

http://gigadb.org/images/data/cropped/08986_orig.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SAMN01822156225400bats Myotis davidii Life stage:adult
Comment:Myotis davidii
Sex:male
...
+
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
SAMPLE:SAMN01822156Coding sequenceFASTA30.15 MB2013-10-25
SAMPLE:SAMN01822156OtherTEXT498.13 KB2013-10-25
SAMPLE:SAMN01822156Protein sequenceFASTA11 MB2013-10-25
SAMPLE:SAMN01822156OtherFASTA487.72 KB2013-10-25
SAMPLE:SAMN01822156AnnotationGFF13.09 MB2013-10-25
SAMPLE:SAMN01822156Sequence assemblyFASTA1.97 GB2013-10-25
Displaying 1-6 of 6 File(s).

History:

+

Other datasets you might like: