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Data released on December 12, 2013

Genomic data from the domestic yak (Bos grunniens).

Auvil, L; Cao, C; Capitanu, B; Hou, H; Hu, Q; Kim, J; Lang, Y; Larkin, D, M; Lewin, H, A; Liao, S; Lu, X; Ma, H; Ma, J; Ma, T; Pan, S; Qian, W; Qian, X; Qiu, Q; Wang, J; Wang, K; Wang, L; Wang, Y; Xia, J; Ye, Z; Yin, Y; Zang, X; Zhang, G; Zhang, J; Zhou, R; Wang, Z; Zhang, D; Zhang, Y; Yonezawa, T; Hasegawa, M; Liu, W; Zhong, Y; Zhang, Y; Huang, Z; Zhang, S; Long, R; Yang, H; Wang, J; Lenstra, J, A; Cooper, D, N; Wu, Y; Wang, J; Shi, P; Wang, J; Liu, J (2013): Genomic data from the domestic yak (Bos grunniens). GigaScience Database. http://dx.doi.org/10.5524/100071 RIS BibTeX Text

Domestic yaks (Bos grunniens) provide meat and other necessities for Tibetans living at high altitude on the Qinghai-Tibetan Plateau and in adjacent regions. Here, we present the draft genome sequence of a female domestic yak generated using Illumina HiSeq 2000 technology at 65-fold coverage.
De novo assembly of 4.4 billion reads from paired-end libraries yielded a draft assembly with a total length of 2,657 Mb, and contig and scaffold N50 sizes of 20.4 kb and 1.4 Mb, respectively. Approximately 90% of the total sequence was covered by 2,083 scaffolds of >307 kb, with the largest scaffold spanning 8.8 Mb.

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Related manuscripts:

doi:10.1038/ng.2343 (PubMed: 22751099)

Accessions (data included in GigaDB):

SRA: SRP009062

Accessions (data not in GigaDB):

SRA: SRP009200
GEO: GSE33300

Genomic

http://gigadb.org/images/data/cropped/100071_Yak.png

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Tibetan yak30521domestic yakdomestic yakBos grunniens Altitude:3700
Breed:yakQH1
Geographic location (country and/or sea,region):Ch...
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Tibetan yakISA-TabTEXT0.74 KB2013-12-12
ISA-TabTEXT-0 KB2013-12-12
ISA-TabTEXT5.17 KB2013-12-12
ReadmeTEXT-0 KB2013-12-12
ISA-TabTEXT2.22 KB2013-12-12
Tibetan yakSequence assemblyFASTA2.48 GB2013-12-12
Tibetan yakCoding sequenceFASTA32.61 MB2013-12-12
Tibetan yakAnnotationTEXT542.23 KB2013-12-12
Tibetan yakAnnotationGFF15.56 MB2013-12-12
Tibetan yakProtein sequenceFASTA11.87 MB2013-12-12
Displaying 1-10 of 11 File(s).

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