Genomic data of the Chinese alligator (Alligator sinensis).
Dataset type: Genomic
Data released on March 28, 2014
Wan Q; Pan S; Hu L; Zhu Y; Xu P; Xia J; Chen H; He G; He J; Ni X; Hou H; Liao S; Yang H; Chen Y; Gao S; Ge Y; Cao C; Li P; Fang L; Liao L; Zhang S; Wang M; Dong W; Fang S (2014): Genomic data of the Chinese alligator (Alligator sinensis). GigaScience Database. http://dx.doi.org/10.5524/100077
The Chinese alligator (Alligator sinensis), a freshwater crocodilian endemic to China, is one of the most endangered crocodilian species. Currently, there are ~100 Chinese alligators in the wild and ~10 000 captive individuals in Zhejiang and Anhui Provinces. We chose the Chinese alligator for genome sequencing with the hope of providing information that could help design scientific captive-breeding programs for population recovery project of this endangered species.
DNA from the chinese aligator was collected in Zhejiang Province, China. We sequenced the 2.3Gb genome with short reads from a series of libraries with various insert sizes ( 170bp, 500bp, 800bp, 2kb, 5kb, 10kb and 20kb) on a HiSeq 2000 sequencer.
The assembled scaffolds of high quality sequences total 314Gb, with the contig and scaffold N50 values of 23.4kb and 2.2Mb respectively. We identified 22,200 protein-coding genes with an mean length of 1403bp.
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Accessions (data generated as part of this study):
|Sample ID||Taxonomic ID||Common Name||Genbank Name||Scientific Name||Sample Attributes|
|SRS470742||38654||Alligator sinensis||chinese alligator||Alligator sinensis|| Geographic location (country and/or sea,region):Ch...|
Geographic location (latitude and longitude):not r...
IUCN Red List:CR
... Geographic location (country and/or sea,region):China, Zhejiang Province
Geographic location (latitude and longitude):not recorded
IUCN Red List:CR