Genomic data of the diploid cotton (Gossypium raimondii).
Dataset type: Genomic
Data released on March 07, 2014
Wang K; Wang Z; Li F; Ye W; Wang J; Song G; Yue Z; Cong L; Shang H; Zhu S; Zou C; Li Q; Yuan Y; Lu C; Wei H; Gou C; Zheng Z; Yin Y; Zhang X; Liu K; Wang B; Song C; Shi N; Kohel RJ; Percy RG; Yu JZ; Zhu Y; Wang J; Yu S (2014): Genomic data of the diploid cotton (Gossypium raimondii). GigaScience Database. http://dx.doi.org/10.5524/100079
Cotton is one of the most economically important crop plants worldwide. Its fiber, commonly known as cotton lint, is the principal natural source for the textile industry.
We have sequenced and assembled a draft genome of G. raimondii, whose progenitor is the putative contributor of the D subgenome to the economically important fiber-producing cotton species Gossypium hirsutum and Gossypium barbadense.
We sequenced the 0.78 Gb genome to a depth of approximately 103 X with short reads from a series of libraries with various insert sizes ( 170 bp, 250 bp, 500 bp, 800 bp, 2 kb, 5 kb, 10 kb, 20 kb and 40 kb) on a HiSeq 2000 sequencer.
The assembled scaffolds of high quality sequences total 78.7 Gb, with the contig and scaffold N50 values of 44.9 kb and 2.3 Mb respectively. We identified 40,976 protein-coding genes with an mean length of 1104 bb.
Read the peer-reviewed publication(s):
Wang, K., Wang, Z., Li, F., Ye, W., Wang, J., Song, G., … Yu, S. (2012). The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics, 44(10), 1098–1103. doi:10.1038/ng.2371
Accessions (data generated as part of this study):
|Sample ID||Taxonomic ID||Common Name||Genbank Name||Scientific Name||Sample Attributes|
|Diploid Cotton CMD10||29730||Gossypium raimondii||Gossypium raimondii|| Cultivar:CMD10|
Geographic location (country and/or sea,region):Ch...
Geographic location (latitude and longitude):not r...
Geographic location (country and/or sea,region):China, Henan province
Geographic location (latitude and longitude):not recorded