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Data released on December 24, 2014

Genomic data of the domestic donkey (Equus asinus).

Albrechtsen, A; Cahill, J; Cappellini, E; Dolocan, A; Froese, D; Fumagalli, M; Ginolhac, A; Johnson, P, L; Kelstrup, C, D; Korneliussen, T; Malaspinas, A, S; Min, J; Moltke, I; Orlando, L; Petersen, B; Raghavan, M; Rasmussen, M; Schubert, M; Seguin-Orlando, A; Stenderup, J; Stiller, M; Szklarczyk, D; Velazquez, A, M; Vilstrup, J, T; Vinther, J; Vogt, J; Wang, X; Zazula, G, D; Zhang, G; Magnussen, K; Mortensen, C; Thompson, J, F; Weinstock, J; Gregersen, K; Eisenmann, V; Røed, K, H; Rubin, C, J; Miller, D, C; Antczak, D, F; Bertelsen, M, F; Brunak, S; Al-Rasheid, K, A; Ryder, O, A; Andersson, L; Mundy, J; Krogh, A; Gilbert, M, P; Kjær, K; Sicheritz-Ponten, T; Jensen, L, J; Olsen, J, V; Hofreiter, M; Nielsen, R; Shapiro, B; Wang, J; Willerslev, E (2014): Genomic data of the domestic donkey (Equus asinus). GigaScience Database. http://dx.doi.org/10.5524/100080 RIS BibTeX Text

The domestic donkey is derived from the African Wild Ass. As with most domesticated species there are a wide variety of coat colours and sizes. They can live for upto 40years.
We sequenced the genome to a depth of approximately 19.4 X with short reads from a series of libraries with various insert sizes ( 800bp and 2kb) on a HiSeq 2000 sequencer.
The assembled scaffolds of high quality sequences total 48.6 Gb.

Contact Submitter

Related manuscripts:

doi:10.1038/nature12323

Accessions (data included in GigaDB):

SRA: SRS431817

Projects:


Genomic

http://gigadb.org/images/data/cropped/100080.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SRS4318179793African assassEquus asinus Isolate:willy
Geographic location (country and/or sea,region):no...
Geographic location (latitude and longitude):not r...
...
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
SRS431817Sequence assemblyFASTA695.05 MB2013-02-20
ReadmeTEXT0.16 KB2013-02-20
Displaying 1-2 of 2 File(s).

History:

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