Genomic data of the plum (Prunus mume).

Dataset type: Genome-Mapping, Genomic
Data released on November 24, 2014

The Plum (Prunus mume), was domesticated in China more than 3,000 years ago as ornamental plant and fruit, is one of the first genomes among Prunus subfamilies of Rosaceae to be sequenced.
DNA from the plum was collected in Tongmai town, Tibet, China. We sequenced the genome to a depth of approximately 101.4 X with short reads from a series of libraries with various insert sizes ( 180bp, 500bp, 800bp, 2kb, 5kb, 10kb, 20kb and 40kb) on a HiSeq 2000 sequencer.
The assembled scaffolds of high quality sequences total 28.4 Gb with the contig and scaffold N50 values of 31.8 kb and 577.8 kb respectively.

Additional details

Read the peer-reviewed publication(s):

Related datasets:

doi:10.5524/100084 Cites doi:10.5524/100434

Accessions (data generated as part of this study):

SRA: SRP014658

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SRS352714102107plumJapanese apricotPrunus mume Geographic location (country and/or sea,region):Ti...
Geographic location (latitude and longitude):not r...
Displaying 1-1 of 1 Sample(s).

File NameSample IDData TypeFile FormatSizeRelease Date 
Optical mapUNKNOWN3.42 MB2015-10-29
Optical mapUNKNOWN4.12 MB2015-10-29
Optical mapUNKNOWN2.32 MB2015-10-29
Optical mapUNKNOWN2.08 MB2015-10-29
Optical mapUNKNOWN1.22 MB2015-10-29
Optical mapUNKNOWN3.56 MB2015-10-29
Optical mapUNKNOWN3.4 MB2015-10-29
Optical mapUNKNOWN5.73 MB2015-10-29
Optical mapUNKNOWN4.25 MB2015-10-29
Optical mapUNKNOWN3.83 MB2015-10-29
Displaying 1-10 of 25 File(s).
Date Action
October 26, 2015 File README.txt updated
November 4, 2015 File plum.genome.pep updated
November 6, 2015 File 13842LA.maps updated
May 1, 2020 File readme_100084.txt updated
May 1, 2020 OM.fa: additional file attribute added