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Data released on November 24, 2014

Genomic data of the plum (Prunus mume).

Cai, M; Chen, W; Du, D; Fan, G; Gao, Y; Han, C; Hao, R; Huang, B; Liang, X; Luo, L; Lv, T; Lv, Y; Pan, H; Shi, W; Sun, F; Sun, L; Sun, M; Tao, Y; Wang, J; Wang, J; Xing, Z; Xu, Z; Yang, W; Yin, Y; Yuan, Z; Zhang, Q; Zhao, F; Zheng, Z; Zhong, X; Cheng, T; Wang, J; Xu, X (2014): Genomic data of the plum (Prunus mume). GigaScience Database. http://dx.doi.org/10.5524/100084 RIS BibTeX Text

The Plum (Prunus mume), was domesticated in China more than 3,000 years ago as ornamental plant and fruit, is one of the first genomes among Prunus subfamilies of Rosaceae to be sequenced.
DNA from the plum was collected in Tongmai town, Tibet, China. We sequenced the genome to a depth of approximately 101.4 X with short reads from a series of libraries with various insert sizes ( 180bp, 500bp, 800bp, 2kb, 5kb, 10kb, 20kb and 40kb) on a HiSeq 2000 sequencer.
The assembled scaffolds of high quality sequences total 28.4 Gb with the contig and scaffold N50 values of 31.8 kb and 577.8 kb respectively.

Contact Submitter

Related manuscripts:

doi:10.1038/ncomms2290

Accessions (data included in GigaDB):

SRA: SRP014658

Genomic, Genome-Mapping

http://gigadb.org/images/data/cropped/100084.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SRS352714102107plumJapanese apricotPrunus mume Geographic location (country and/or sea,region):Ti...
Geographic location (latitude and longitude):not r...
Ploidy:unknown
...
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Optical mapUNKNOWN3.42 MB2015-10-29
Optical mapUNKNOWN4.12 MB2015-10-29
Optical mapUNKNOWN2.32 MB2015-10-29
Optical mapUNKNOWN2.08 MB2015-10-29
Optical mapUNKNOWN1.22 MB2015-10-29
Optical mapUNKNOWN3.56 MB2015-10-29
Optical mapUNKNOWN3.4 MB2015-10-29
Optical mapUNKNOWN5.73 MB2015-10-29
Optical mapUNKNOWN4.25 MB2015-10-29
Optical mapUNKNOWN3.83 MB2015-10-29
Displaying 1-10 of 25 File(s).

History:

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