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Data released on July 23, 2014

Supporting materials for the "Annotated Features of Domestic Cat-Felis catus Genome".

Alkan, C; Antunes, A; Barr, C; Blackistone, K; Brukhin, V; Cherkasov, N; David, V, A; Dobrynin, P; Driscoll, C, A; Goldman, D; Koepfli, K; Komissarov, A; Logachev, A; Lorente-Galdos, B; Makunin, A; Marques-Bonet, T; Menotti-Raymond, M; Narfström, K; O’Brien, S, J; Pontius, J; Quilez, J; Shevchenko, A; Simonov, S; Svitin, A; Tamazian, G (2014): Supporting materials for the "Annotated Features of Domestic Cat-Felis catus Genome". GigaScience Database. http://dx.doi.org/10.5524/100098 RIS BibTeX Text

Domestic cats enjoy an extensive veterinary medical surveillance which has described nearly 250 genetic diseases analogous to human disorders. Feline infectious agents offer powerful natural models of deadly human diseases including feline immunodeficiency virus, feline sarcoma virus and feline leukemia virus. A rich veterinary literature of feline disease pathogenesis and the demonstration of a highly conserved ancestral mammal genome organization make the cat genome annotation a highly informative resource that facilitates multifaceted research endeavors.
We report here a preliminary annotation of the whole genome sequence of Cinnamon, a domestic cat living in Columbia, Mo., bisulfite sequencing of Boris, a male cat from St. Petersburg, and light 30x sequencing of Sylvester, a European wildcat progenitor of domestication. The annotation includes 21,865 protein coding genes identified by comparative approach, 217 loci of endogenous retrovirus-like elements, repetitive elements which comprise about 55.7% of the whole genome, 99,494 new SNVs, 8,355 new indels, 743,326 evolutionary constrained elements and 3,182 microRNA homologues.

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Related manuscripts:

doi:10.1186/2047-217X-3-13

Accessions (data included in GigaDB):

SAMPLE: SAMN00115879
SAMPLE: SAMN02898152
SAMPLE: SAMN02795853

Accessions (data not in GigaDB):

ENA: SRP002335

Projects:


Genomic

http://gigadb.org/images/data/cropped/100098.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SAMN001158799685catdomestic catFelis catus Alternative accession-INSDC:AANG02000000
Collection date:not available
Geographic location (country and/or sea,region):Un...
...
+
SAMN027958539685catdomestic catFelis catus Age:3
Sample source:Saint-Petersburg State Academy of Ve...
Breed:mongrel
...
+
SAMN02898152463207European wildcat Felis silvestris silvestris Age:not available
Breed:Scottish Wildcat
Collection date:not available
...
+
Displaying 1-3 of 3 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
SAMPLE:SAMN02795853AnnotationGFF15.45 GB2014-06-11
AnnotationGFF36.04 MB2014-06-11
AnnotationGFF28.79 MB2014-06-11
AnnotationGFF12.54 MB2014-06-11
AnnotationGFF271.14 KB2014-06-11
AnnotationGFF258.12 MB2014-06-11
AnnotationGFF168.78 MB2014-06-11
AnnotationGFF94.53 KB2014-06-11
AnnotationGFF26.24 KB2014-06-11
AnnotationUNKNOWN83.06 MB2014-06-11
Displaying 1-10 of 22 File(s).

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