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Data released on November 14, 2014

Genome sequence of a Mongolian individual

Bai, H; Bayinnamula, B; Bu, J; Chang, Y; Chen, M; Chen, Y; Gao, Y; Guan, B; Guo, X; Jirimutu, J; Lan, T; Li, T; Li, W; Li, W; Liang, F; Narisu, N; Shuangshan, S; Su, Z; Suyalatu, S; Wang, D; Wu, H; Xing, Y; Yang, X; Yang, X; Yang, Z; Zhang, D; Zhang, Y; Zhao, X; Zhu, S; Feng, Q; Wang, J; Yang, H; Wang, J; Wu, Q; Yin, Y; Zhou, H (2014): Genome sequence of a Mongolian individual GigaScience Database. http://dx.doi.org/10.5524/100104 RIS BibTeX Text

We present the genome sequence of a Mongolian male individual. The genome is assembled using short reads produced from the massive parallel sequencing method, resulting in 130.8-fold genome coverage. We identify high-confidence variation sets validated by chip genotyping and PCR-Sanger sequencing, including 3.7 million single nucleotide polymorphisms and 756,234 short insertions and deletions. We assign the paternal inheritance of the individual to the lineage D3a through Y haplogroup analysis and infer Genghis Khan had a common paternal ancestor with Tibeto-Burman populations. We investigate the gene flow between Mongolians and other ethnic groups and demonstrate that the genetic influences on them most likely resulted from the expansion of the Mongol Empire. The Mongolian genome lays a foundation to further understand human evolution and explore population specific genetic causes of diseases/traits in Mongolians and closely related groups.

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Related manuscripts:

doi:10.1093/gbe/evu242

Accessions (data not in GigaDB):

SRA: SRS687913

Genomic

http://gigadb.org/images/data/cropped/mongolia.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SRS6879139606HumanhumanHomo sapiens IHMC ethnicity:mongol
Geographic location (country and/or sea,region):China
Sex:male
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
SAMPLE:SRS687913AnnotationGFF1.69 GB2014-09-04
SAMPLE:SRS687913AnnotationGFF1.53 GB2014-09-04
SAMPLE:SRS687913Sequence assemblyFASTA-1501446.59 KB2014-09-04
SAMPLE:SRS687913AnnotationUNKNOWN2.33 MB2014-09-04
SAMPLE:SRS687913AnnotationUNKNOWN1.7 MB2014-09-04
SAMPLE:SRS687913AnnotationUNKNOWN3.35 MB2014-09-04
ImageUNKNOWN800.19 KB2014-09-04
SAMPLE:SRS687913OtherEXCEL0.19 KB2014-09-04
SAMPLE:SRS687913Coding sequenceFASTA30.96 MB2014-09-04
SAMPLE:SRS687913AnnotationGFF12.21 MB2014-09-04
Displaying 1-10 of 27 File(s).

History:

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