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Data released on October 29, 2014

The genome of the Indian gharial (Gavialis gangeticus).

Armstrong, J; Braun, E, L; Caballero, J; Capella-Gutierrez, S; Castoe, T, A; Chong, A, Y; Earl, D; Finger Jr., J, W; Fujita, M, K; Gongora, J; Green, R, E; Hickey, G; Hubley, R, M; Isberg, S, R; Jaratlerdsiri, W; Jurka, J; Kern, C; Kojima, K, K; Lavoie, C, A; Miles, L; Moran, C; Nguyen, N; Opazo, J, C; Platt, R, N; Ramakodi, M, P; Smit, A, F; St John, J, A; Suh, A; Vandewege, M, W; Burgess, S, C; Iriarte, A; McCormack, J; Edwards, S, V; Lyons, E; Breen, M; Williams, C; Howard, J, T; Gresham, C, R; Peterson, D, G; Schmitz, J; Pollock, D, D; Haussler, D; Triplett, E, W; Zhang, G; Irie, N; Jarvis, E, D; Brochu, C, A; Schmidt, C, J; McCarthy, F, M; Faircloth, B, C; Hoffmann, F, G; Glenn, T, C; Gabaldon, T; Paten, B; Ray, D, A (2014): The genome of the Indian gharial (Gavialis gangeticus). GigaScience Database. http://dx.doi.org/10.5524/100128 RIS BibTeX Text

The Indian gharial (Gavialis gangeticus), also known as the gavial or the fish-eating crocodile, is a crocodilian of the family Gavialidae, native to the Indian Subcontinent. The global gharial population is estimated at fewer than 235 individuals, which are threatened by loss of riverine habitat, depletion of fish resources and use of fishing nets.
These data have been produced as part of the Crocodilian Genomes Project. Genomic DNA was isolated using blood from an adult female that died of natural causes in 2010. Briefly, the gharial data consisted of Illumina reads from three libraries ranging from 50 to 170x coverage. These reads were assembled using SOAPdenovo v2.04.

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Related manuscripts:

doi:10.1126/science.1254449

Related datasets:

doi:10.5524/100128 IsPartOf doi:10.5524/100125

Genome browser:

http://crocgenome.hpc.msstate.edu/gb2/gbrowse/ggan/

Accessions (data included in GigaDB):

PROJECT: PRJNA162735
SAMPLE: SAMN03102901

Projects:


Genomic

http://gigadb.org/images/data/cropped/gharial.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Ggan-Ray94835true gharialGharialGavialis gangeticus Estimated genome size:unknown size
IUCN Red List:CR
Ploidy:diploid
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Coding sequenceFASTA20.45 MB2014-10-21
AnnotationUNKNOWN34.79 MB2014-10-21
Tabular dataUNKNOWN15.35 MB2014-10-21
Protein sequenceFASTA6.93 MB2014-10-21
Ggan-RaySequence assemblyFASTA653.37 MB2014-10-30
ReadmeTEXT0.59 KB2014-10-21
Tabular dataUNKNOWN713.87 KB2014-10-21
Displaying 1-7 of 7 File(s).

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