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Data released on March 25, 2015

Supporting material for "Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of2 the pest fruit fly Bactrocera cucurbitae."

Calla, B; DeRego, T; Geib, S, M; Hall, B; Sim, S, B (2015): Supporting material for "Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of2 the pest fruit fly Bactrocera cucurbitae." GigaScience Database. http://dx.doi.org/10.5524/100135 RIS BibTeX Text

Bactrocera cucurbitae is an important agricultural pest. Basic genomic information is lacking for this species, which could be used to inform methods of control, damage mitigation, and eradication efforts of this pest. A comprehensive transcriptome has been sequenced, assembled, and annotated from a mass-rearing sexing strain of this species. This is a foundational resource that can be leveraged to better understand the physiology and biochemistry of this insect as well as utilized in population genetics.
A transcriptome assembly was constructed containing 17,654 transcript isoforms derived from 10,425 unique genes. This transcriptome size is similar to reports from other Tephritid species and likely includes about 70-80% of the protein coding genes in the genome. The sequence data is publically available in INSDC archives at NCBI/EBI/DDBJ and here we present the InterProScan, BLAST and other analysis results used to annotate the transcriptome, all is provided as a resource to Tephritid researcher community.

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Related manuscripts:

doi:10.1186/s13742-015-0053-x

Additional information:

http://genomeannotation.github.io/

Accessions (data included in GigaDB):

BioProject: PRJNA259566

Transcriptomic

http://gigadb.org/images/data/cropped/100135.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Bcur_adult28588melon fruit flymelon flyBactrocera cucurbitae Age:mixed
Alternative accession-BioSample:SAMN03010448
Life stage:adult
...
+
Bcur_egg28588melon fruit flymelon flyBactrocera cucurbitae Age:mixed
Alternative accession-BioSample:SAMN03010451
Life stage:egg
...
+
Bcur_larvae28588melon fruit flymelon flyBactrocera cucurbitae Age:mixed
Alternative accession-BioSample:SAMN03010450
Life stage:larvae
...
+
Bcur_pupae28588melon fruit flymelon flyBactrocera cucurbitae Age:mixed
Alternative accession-BioSample:SAMN03010449
Life stage:pupae
...
+
Displaying 1-4 of 4 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Tabular dataUNKNOWN56.6 MB2015-03-09
Tabular dataUNKNOWN1.35 MB2015-03-09
ReadmeTEXT0.76 KB2015-03-09
Tabular dataUNKNOWN2.87 MB2015-03-09
Tabular dataUNKNOWN4.16 MB2015-03-09
Coding sequenceFASTA106.35 MB2015-03-09
Displaying 1-6 of 6 File(s).

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