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Data released on May 11, 2015

Supporting scripts and data for "Investigation into the annotation of protocol sequencing steps in the Sequence Read Archive".

Alnasir, J; Shanahan, H (2015): Supporting scripts and data for "Investigation into the annotation of protocol sequencing steps in the Sequence Read Archive". GigaScience Database. http://dx.doi.org/10.5524/100142 RIS BibTeX Text

The workflow for the production of high-throughput sequencing data from nucleic acid samples is complex. There are a series of protocol steps to be followed in the preparation of samples for next-generation sequencing. The quantification of bias in a number of protocol steps, namely DNA fractionation, blunting, phosphorylation, adapter ligation and library enrichment, remains to be determined. We examined the experimental metadata of the public repository Sequence Read Archive (SRA) in order to ascertain the level of annotation of important sequencing steps in submissions to the database.

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Related manuscripts:

doi:10.1186/s13742-015-0064-7

Keywords:

Sequence Read Archive metadata SQL experimental protocol 

Metadata

http://gigadb.org/images/data/cropped/100142.jpg

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File NameSample IDFile TypeFile FormatSizeRelease Date 
ImageUNKNOWN54.25 KB2015-04-29
ImageUNKNOWN79.8 KB2015-04-30
ReadmeTEXT2.3 KB2015-04-29
OtherUNKNOWN366.11 MB2015-04-29
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