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Data released on June 09, 2015

Supporting materials for "SOAPdenovo2 Case Study".

Avila-Garcia, M, S; Edmunds, S; Gonzalez-Beltran, A; Lam, T; Lee, T; Li, P; Luo, R; Rocca-Serra, P; Roos, M; Sansone, S; Thompson, M; Zhao, J (2015): Supporting materials for "SOAPdenovo2 Case Study". GigaScience Database. http://dx.doi.org/10.5524/100148 RIS BibTeX Text

The SOAPdenovo2 case study is a reproducibility study aimed at exploring how existing research objects and workflow enactment engines can help assess, record and preserve scientific workflows and associated findings by reviewing a comparison between sequence assembly algorithm performance in the light of development of the SOAPdenovo2 de novo genome assembler. The case study was a joint effort by the GigaScience journal, the Investigation/Study/Assay (ISA) infrastructure, Nanopublication (Nanopub) and Research Object (RO) communities and SOAPdenovo2 de novo genome assembler developers. Included here are the relevant ISA-TAB, linkedISA, nanopubs and Research Object files. For more see the paper and GitHub page.

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Related manuscripts:

doi:10.1186/s13742-015-0069-2
doi:10.1186/2047-217X-1-18

Related datasets:

doi:10.5524/100148 IsNewVersionOf doi:10.5524/100044

Additional information:

http://isa-tools.github.io/soapdenovo2/

Keywords:

Galaxy workflows reproducible education ISA-Tab 

Software, Workflow

http://gigadb.org/images/data/cropped/100044_SOAPdenovo2.jpg

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
OtherTAR51.84 KB2015-05-22
ReadmeTEXT0.59 KB2015-05-22
Displaying 1-2 of 2 File(s).

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