Supporting materials for "SOAPdenovo2 Case Study".

Dataset type: Software, Workflow
Data released on June 09, 2015

Gonzalez-Beltran A; Li P; Zhao J; Thompson M; Avila-Garcia MS; Luo R; Lam T; Lee T; Roos M; Edmunds SC; Sansone S; Rocca-Serra P (2015): Supporting materials for "SOAPdenovo2 Case Study". GigaScience Database.


The SOAPdenovo2 case study is a reproducibility study aimed at exploring how existing research objects and workflow enactment engines can help assess, record and preserve scientific workflows and associated findings by reviewing a comparison between sequence assembly algorithm performance in the light of development of the SOAPdenovo2 de novo genome assembler. The case study was a joint effort by the GigaScience journal, the Investigation/Study/Assay (ISA) infrastructure, Nanopublication (Nanopub) and Research Object (RO) communities and SOAPdenovo2 de novo genome assembler developers. Included here are the relevant ISA-TAB, linkedISA, nanopubs and Research Object files. For more see the paper and GitHub page.

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doi:10.5524/100148 IsNewVersionOf doi:10.5524/100044

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Date Action
June 9, 2015 Dataset publish
October 23, 2015 File ISA-tools-soapdenovo2-v1.0-1-g9eede6f.tar.gz updated
October 23, 2015 File readme.txt updated
July 9, 2018 External Link added :
July 10, 2018 Manuscript Link added : 10.1371/journal.pone.0127612