Supporting data and materials for "NCBI BLAST+ integrated into Galaxy".

Dataset type: Software
Data released on August 12, 2015

Cock PJA; Chilton JM; Grüning B; Johnson JE; Soranzo N (2015): Supporting data and materials for "NCBI BLAST+ integrated into Galaxy". GigaScience Database. http://dx.doi.org/10.5524/100149

DOI10.5524/100149

The NCBI BLAST suite has become ubiquitous in modern molecular biology and is used for small tasks such as checking capillary sequencing results of single PCR products, genome annotation or even larger scale pan-genome analyses. For early adopters of the Galaxy web-based biomedical data analysis platform, integrating BLAST into Galaxy was a natural step for sequence comparison workflows. Here we provide the command line NCBI BLAST+ tool suite wrapped for use within Galaxy.
The integration of the BLAST+ tool suite into Galaxy has the goal of making common BLAST tasks easy and advanced tasks possible. This project is an informal international collaborative effort, it is deployed and used on Galaxy servers worldwide.

Additional details

Read the peer-reviewed publication(s):

Cock, P. J. A., Chilton, J. M., Grüning, B., Johnson, J. E., & Soranzo, N. (2015). NCBI BLAST+ integrated into Galaxy. GigaScience, 4(1). doi:10.1186/s13742-015-0080-7

Additional information:

http://www.myexperiment.org/workflows/4584.html

https://registry.hub.docker.com/u/bgruening/galaxy-blast/dockerfile/

https://github.com/peterjc/galaxy_blast





File NameSample IDData TypeFile FormatSizeRelease Date 
Mixed archivezip5.69 KB2015-05-18
GitHub archivezip788.27 KB2015-05-18
Galaxy workflowGalaxyWF19.96 KB2015-05-18
ReadmeTEXT0.65 KB2015-05-18
Displaying 1-4 of 4 File(s).
Funding body Awardee Award ID Comments
National Science Foundation 1147079 John M. Chilton and James E. Johnson
Date Action
August 12, 2015 Dataset publish
September 4, 2015 Manuscript Link added : 10.1186/s13742-015-0080-7