Supporting data for "Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper"

Dataset type: Genomic
Data released on October 04, 2016

Yin W; Wang Z; Li Q; Lian J; Zhou Y; Lu B; Jin L; Qiu P; Zhang P; Zhu W; Wen B; Huang Y; Lin Z; Qiu B; Su X; Zhang G; Yan G; Zhou Q (2016): Supporting data for "Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper" GigaScience Database. http://dx.doi.org/10.5524/100196

DOI10.5524/100196

The five-pacer viper (Deinagkistrodon acutus) is a venomous snake living in Southern China, characterized by a triangular head and upturned rostral. Its venom, as a potent hemotoxin that is strongly hemorrhagic, is dangerous for people and is a potential medicine for thrombosis. It is also an excellent model for limb development, sex chromosome evolution and venom evolution et al. Sequencing the D. acutus genome and comparing it with other representative snakes and lizard will reveal numerous insights into the major genomic adaptive/degenerative changes occurred at the ancestor and along individual branches of snakes, and would also promote current antivenom therapy and drug discovery out of the viper toxins. Data include autosomes and Z scaffolds from male data and W scaffolds from female data.

Additional details

Read the peer-reviewed publication(s):

Yin, W., Wang, Z., Li, Q., Lian, J., Zhou, Y., Lu, B., … Zhou, Q. (2016). Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper. Nature Communications, 7(1). doi:10.1038/ncomms13107

Accessions (data generated as part of this study):

BioProject: PRJNA314559

Accessions (data referenced by this study):

BioProject: PRJNA314443





Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SAMN0453492336307 Chinese moccasinDeinagkistrodon acutus Sex:male
Common name:Chinese moccasin snake
Tissue:muscle
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SAMN0453492436307 Chinese moccasinDeinagkistrodon acutus Sex:female
Common name:Chinese moccasin snake
Tissue:muscle
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Displaying 1-2 of 2 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Coding sequenceFASTA10.09 MB2016-08-09
Sequence assemblyFASTA417.61 MB2016-08-08
AnnotationGFF14.99 MB2016-08-08
Protein sequenceFASTA6.48 MB2016-08-09
Repeat sequenceFASTA37.97 MB2016-08-09
MD5sumTEXT0.12 KB2016-08-08
ReadmeTEXT0.82 KB2016-08-08
Displaying 1-7 of 7 File(s).
Date Action
October 4, 2016 Dataset publish