The data for: Genomic resources and draft reference assemblies of the human and porcine scabies mites, Sarcoptes scabiei var. hominis and var. suis
Dataset type: Genomic
Data released on May 20, 2016
Mofiz E; Holt D; Seemann T; Currie BJ; Fischer K; Papenfuss AT (2016): The data for: Genomic resources and draft reference assemblies of the human and porcine scabies mites, Sarcoptes scabiei var. hominis and var. suis GigaScience Database. http://dx.doi.org/10.5524/100198
The scabies mite, Sarcoptes scabiei, is a parasitic arachnid and cause of the infectious skin disease scabies in humans or mange in many animal species. We sequenced the genome of two samples of S. scabiei var. hominis obtained from unrelated patients with crusted scabies located in different parts of northern Australia using the Illumina HiSeq. We also sequenced samples of S. scabiei var. suis from a pig model. Due to the small size of scabies mite, these data are derived from pools of thousands of mites and are metagenomic, including host and microbiome DNA. We performed cleaning and de novo assembly and present Sarcoptes scabiei var. hominis and var. suis draft reference genomes. We have constructed a preliminary annotation of this reference comprising 13,226 putative coding sequences based on sequence similarity to known proteins.
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Accessions (data generated as part of this study):
BioProject:
PRJEB12428
Accessions (data referenced by this study):
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
Sarcoptes scabiei var. hominis patient A | 52283 | Sarcoptes scabiei | Alternative accession-SRA Sample:ERS1037125 Alternative accession-BioSample:SAMEA3729976 Infra specific name:hominis ... + | ||
Sarcoptes scabiei var. hominis patient B | 52283 | Sarcoptes scabiei | Alternative accession-SRA Sample:ERS1037126 Alternative accession-BioSample:SAMEA3729977 Infra specific name:hominis ... + | ||
Sarcoptes scabiei var suis pig unwashed | 52283 | Sarcoptes scabiei | Alternative accession-SRA Sample:ERS1037205 Alternative accession-BioSample:SAMEA3730056 Infra specific name:suis ... + | ||
Sarcoptes scabiei var suis pig washed 1 | 52283 | Sarcoptes scabiei | Alternative accession-SRA Sample:ERS1037206 Alternative accession-BioSample:SAMEA3730057 Infra specific name:suis ... + | ||
Sarcoptes scabiei var suis pig washed 2 | 52283 | Sarcoptes scabiei | Alternative accession-SRA Sample:ERS1037207 Alternative accession-BioSample:SAMEA3730058 Infra specific name:suis ... + | ||
Sarcoptes scabiei var suis pig washed 3 | 52283 | Sarcoptes scabiei | Alternative accession-SRA Sample:ERS1037208 Alternative accession-BioSample:SAMEA3730059 Infra specific name:suis ... + |