Gene mapping data of nine agronomic traits and genome assembly data of a foxtail millet RIL population
Dataset type: Genome-Mapping, Genomic
Data released on August 18, 2016
Ni X; Xia Q; Zhang H; Guo T; Fan G; Wang R; Cai Y; Huang P; Xiang H; Liu C; Chen Q; Li N; Zou H; Cai X; Lei X; Zhang R; Wang X; Zhou C; Zhao Z; Zhang G; Quan Z (2016): Gene mapping data of nine agronomic traits and genome assembly data of a foxtail millet RIL population GigaScience Database. http://dx.doi.org/10.5524/100213
Foxtail millet (Setaria italica) provides food and fodder in semi-arid regions and infertile land. Resequencing of 184 foxtail millet recombinant inbred lines (RILs) was performed to aid the research on species improvement. Bin map were constructed based on the RILs’ recombination data. By anchoring some unseated scaffolds and filling gap, we update two original millet reference genomes Zhanggu and Yugu to the second edition. Gene mapping of nine agronomic traits were done based on this RIL population. The genome resequencing and QTL mapping provided important tools for foxtail millet research and breeding. Resequencing of the RILs could also provide an effective way for high quantity genome assembly and gene identification.
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doi:10.5524/100213 References doi:10.5524/100020
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
ZA1000 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483999 Cultivar:millet170 Age:not collected ... + |
ZA791 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483829 Cultivar:millet1 Age:not collected ... + |
ZA792 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483831 Cultivar:millet2 Age:not collected ... + |
ZA793 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483830 Cultivar:millet3 Age:not collected ... + |
ZA794 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483832 Cultivar:millet4 Age:not collected ... + |
ZA795 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483833 Cultivar:millet5 Age:not collected ... + |
ZA796 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483834 Cultivar:millet6 Age:not collected ... + |
ZA797 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483835 Cultivar:millet7 Age:not collected ... + |
ZA798 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483836 Cultivar:millet8 Age:not collected ... + |
ZA799 | 4555 | Foxtail millet | foxtail millet | Setaria italica | Alternative accession-SRA Sample:SRS1483837 Cultivar:millet9 Age:not collected ... + |