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Data released on August 18, 2016

Gene mapping data of nine agronomic traits and genome assembly data of a foxtail millet RIL population

Cai, X; Cai, Y; Chen, Q; Fan, G; Guo, T; Huang, P; Lei, X; Li, N; Liu, C; Ni, X; Wang, R; Wang, X; Xia, Q; Xiang, H; Zhang, H; Zhang, R; Zou, H; Zhao, Z; Zhou, C; Zhang, G; Quan, Z (2016): Gene mapping data of nine agronomic traits and genome assembly data of a foxtail millet RIL population GigaScience Database. http://dx.doi.org/10.5524/100213 RIS BibTeX Text

Foxtail millet (Setaria italica) provides food and fodder in semi-arid regions and infertile land. Resequencing of 184 foxtail millet recombinant inbred lines (RILs) was performed to aid the research on species improvement. Bin map were constructed based on the RILs’ recombination data. By anchoring some unseated scaffolds and filling gap, we update two original millet reference genomes Zhanggu and Yugu to the second edition. Gene mapping of nine agronomic traits were done based on this RIL population. The genome resequencing and QTL mapping provided important tools for foxtail millet research and breeding. Resequencing of the RILs could also provide an effective way for high quantity genome assembly and gene identification.

Contact Submitter

Related manuscripts:

doi:10.1101/069625

Related datasets:

doi:10.5524/100213 References doi:10.5524/100020

Keywords:

genome assembly foxtail millet 

Genomic, Genome-Mapping

http://gigadb.org/images/data/cropped/100020_Setaria_italica.jpg

Funding:

  • Funding body - Basic Research Program Support by Shenzhen Municipal Government
  • Location - China
  • Award ID - NO.JCYJ20120618172523025

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
ZA10004555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483999
Cultivar:millet170
Age:Not collect
...
+
ZA7914555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483829
Cultivar:millet1
Age:Not collect
...
+
ZA7924555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483831
Cultivar:millet2
Age:Not collect
...
+
ZA7934555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483830
Cultivar:millet3
Age:Not collect
...
+
ZA7944555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483832
Cultivar:millet4
Age:Not collect
...
+
ZA7954555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483833
Cultivar:millet5
Age:Not collect
...
+
ZA7964555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483834
Cultivar:millet6
Age:Not collect
...
+
ZA7974555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483835
Cultivar:millet7
Age:Not collect
...
+
ZA7984555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483836
Cultivar:millet8
Age:Not collect
...
+
ZA7994555Foxtail milletfoxtail milletSetaria italica Alternative accession-SRA_sample:SRS1483837
Cultivar:millet9
Age:Not collect
...
+
Displaying 1-10 of 184 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Genome sequenceFASTA43.39 MB2016-07-25
OtherUNKNOWN15.67 MB2016-07-25
Genome sequenceFASTA50.35 MB2016-07-25
OtherUNKNOWN32.99 MB2016-07-25
OtherUNKNOWN29.87 MB2016-07-25
Genome sequenceFASTA52.62 MB2016-07-25
Genome sequenceFASTA42.17 MB2016-07-25
OtherUNKNOWN10.27 MB2016-07-25
Genome sequenceFASTA48.21 MB2016-07-25
OtherUNKNOWN22.18 MB2016-07-25
Displaying 1-10 of 19 File(s).

History:

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