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Data released on November 22, 2016

Supporting data for "Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade"

Chitwood, D, H; Otoni, W, C (2016): Supporting data for "Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade" GigaScience Database. http://dx.doi.org/10.5524/100251 RIS BibTeX Text

Leaf shape among Passiflora species is spectacularly diverse. Underlying this diversity in leaf shape are profound changes in the patterning of the primary vasculature and laminar outgrowth. Each of these aspects of leaf morphology—vasculature and blade—provides different insights into leaf patterning.
Here, we morphometrically analyze >3,300 leaves from 40 different Passiflora species collected sequentially across the vine. Each leaf is measured in two different ways: using 1) 15 homologous Procrustes-adjusted landmarks of the vasculature, sinuses, and lobes and 2) Elliptical Fourier Descriptors (EFDs), which quantify the outline of the leaf. The ability of landmarks, EFDs, and both datasets together are compared to determine their relative ability to predict species and node position within the vine. Pairwise correlation of x and y landmark coordinates and EFD harmonic coefficients reveals close associations between traits and insights into the relationship between vasculature and blade patterning.
Landmarks, more reflective of the vasculature, and EFDs, more reflective of the blade contour, describe both similar and distinct features of leaf morphology. Landmarks and EFDs vary in ability to predict species identity and node position in the vine and exhibit a correlational structure (both within landmark or EFD traits and between the two data types) revealing constraints between vascular and blade patterning underlying natural variation in leaf morphology among Passiflora species.

Contact Submitter

Related manuscripts:

doi:10.1093/gigascience/giw008

Additional information:

https://github.com/DanChitwood/PassifloraLeaves

Keywords:

Passiflora morphometrics leaves leaf morphology heteroblasty Procrustes analysis Elliptical Fourier Descriptors 

Imaging

http://gigadb.org/images/data/cropped/100251.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Pact1_1_17159424  Passiflora actinia Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
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Pact2_1_14159424  Passiflora actinia Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pact3_1_23159424  Passiflora actinia Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pact4_1_16159424  Passiflora actinia Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pact5_1_25159424  Passiflora actinia Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pala1_11_15159422  Passiflora alata Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pala1_1_4159422  Passiflora alata Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pala1_5_6159422  Passiflora alata Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pala1_7_8159422  Passiflora alata Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
+
Pala1_9_10159422  Passiflora alata Description:Scanned leaves
Geographic location (latitude and longitude):-20.7...
Geographic location (country and/or sea,region):Br...
...
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Displaying 1-10 of 555 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Mixed archiveGZIP14.31 GB2016-10-28
archivezip65.54 MB2016-11-22
Pact1_1_17ImageTIF99.06 MB2016-10-25
Pact2_1_14ImageTIF98.74 MB2016-10-25
Pact3_1_23ImageTIF101.46 MB2016-10-25
Pact4_1_16ImageTIF101.46 MB2016-10-25
Pact5_1_25ImageTIF101.46 MB2016-10-25
Pala1_11_15ImageTIF101.46 MB2016-10-25
Pala1_1_4ImageTIF101.46 MB2016-10-25
Pala1_5_6ImageTIF97.78 MB2016-10-25
Displaying 1-10 of 558 File(s).

History:

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