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Data released on December 31, 2016

Supporting data for "De novo transcriptome assemblies of four xylem sap-feeding insects"

Castle, S, J; Cowden, C, C; Tassone, E, E (2016): Supporting data for "De novo transcriptome assemblies of four xylem sap-feeding insects" GigaScience Database. http://dx.doi.org/10.5524/100258 RIS BibTeX Text

The four xylem-feeding insects are all vectors of the pytopahogenic bacterium that causes Pierce's disease of grapevines and other crop diseases. Here we have sequenced, de novo assembled, and annotated a comprehensive transcriptome from these four insects. These four transcriptomes represent a significant expansion of data for insect herbivores that feed exclusively on xylem sap, a nutritionally deficient dietary source relative to other plant tissues and fluids. Comparison of transcriptome data with insect herbivores that utilize other dietary sources may illuminate fundamental differences in the biochemistry of dietary specialization.

Contact Submitter

Related manuscripts:

doi:10.1093/gigascience/giw007

Accessions (data included in GigaDB):

BioProject: PRJNA303150
BioProject: PRJNA303151
BioProject: PRJNA303152
BioProject: PRJNA299492

Keywords:

Transcriptome RNA-seq Trinity Insect herbivory Endosymbiont 

Transcriptomic

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Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
SAMN0420833236148  Graphocephala atropunctata Common name:Bluegreen sharpshooter
Alternative accession-BioSample:SAMN04208332
Description:RNA sample extracted from whole specim...
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SAMN0420833336148  Graphocephala atropunctata Common name:Bluegreen sharpshooter
Alternative accession-BioSample:SAMN04208333
Description:RNA sample extracted from whole specim...
...
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SAMN0420833436148  Graphocephala atropunctata Common name:Bluegreen sharpshooter
Alternative accession-BioSample:SAMN04208334
Description:RNA sample extracted from whole specim...
...
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SAMN042929711464854  Cuerna arida Common name:Desert sharpshooter
Alternative accession-BioSample:SAMN04292971
Description:RNA sample extracted from whole specim...
...
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SAMN042929721464854  Cuerna arida Common name:Desert sharpshooter
Alternative accession-BioSample:SAMN04292972
Description:RNA sample extracted from whole specim...
...
+
SAMN042929731464854  Cuerna arida Common name:Desert sharpshooter
Alternative accession-BioSample:SAMN04292973
Description:RNA sample extracted from whole specim...
...
+
SAMN04293489320908  Homalodisca liturata Common name:smoketree sharpshooter
Alternative accession-BioSample:SAMN04293489
Description:RNA sample extracted from whole specim...
...
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SAMN04293490320908  Homalodisca liturata Common name:smoketree sharpshooter
Alternative accession-BioSample:SAMN04293490
Description:RNA sample extracted from whole specim...
...
+
SAMN04293491320908  Homalodisca liturata Common name:smoketree sharpshooter
Alternative accession-BioSample:SAMN04293491
Description:RNA sample extracted from whole specim...
...
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SAMN0429349338151 Arizona spittle bugClastoptera arizonana Common name:Arizona spittlebug
Alternative accession-BioSample:SAMN04293493
Description:RNA sample extracted from whole specim...
...
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Displaying 1-10 of 12 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
BLASTTEXT49.22 MB2016-12-22
BLASTTEXT409.14 MB2016-12-22
BLASTTEXT457.55 MB2016-12-22
BLASTUNKNOWN3.41 MB2016-12-22
annotationFASTA24.11 MB2016-12-22
BLASTTEXT458.97 MB2016-12-22
BLASTUNKNOWN4.01 MB2016-12-22
annotationFASTA28.22 MB2016-12-22
Genome sequenceFASTA134.44 MB2016-12-22
Genome sequenceFASTA104.11 MB2016-12-22
Displaying 1-10 of 33 File(s).

History:

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