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Data released on June 30, 2017

Supporting data for "An expanded mammal mitogenome dataset from Southeast Asia"

Salleh, F, M; Liu, S; Penaloza, F; Ramos-Madrigal, J; Sinding, M, S; Martins, R; Patel, R, P; Lenz, D; Fickel, J; Roos, C; Shamsir, M, S; Azman, M, S; Lim, B, K; Rossiter, S, J; Wilting, A; Gilbert, M, P (2017): Supporting data for "An expanded mammal mitogenome dataset from Southeast Asia" GigaScience Database. http://dx.doi.org/10.5524/100313 RIS BibTeX Text

Southeast (SE) Asia is one of the most biodiverse regions in the world and it holds approximately 20% of all mammal species. Despite this, the majority of SE Asia’s genetic diversity is still poorly characterised. The growing interest in using environmental DNA (eDNA) to assess and monitor SE Asian species, in particular threatened mammals - has created the urgent need to expand the available reference database of mitochondrial barcode and complete mitogenome sequences. We have partially addressed this need by generating 72 new mitogenome sequences reconstructed from DNA isolated from a range of historical and modern tissue samples.

Contact Submitter

Additional information:

http://www.erda.dk/public/archives/YXJjaGl2ZS1zajh4ZTQ=/published-archive.html

Protocols.io:

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Accessions (data included in GigaDB):

SRA: PRJNA361218

Keywords:

invertebrate-derived DNA iDNA metabarcoding GenBank Taxonomic assignment 

Genomic

http://gigadb.org/images/data/cropped/100313.jpg

Funding:

  • Funding body - German Federal Ministry of Education and Research
  • Award ID - BMBF FKZ:01LN1301A
  • Awardee - A Wilting
  • Funding body - Leibniz-Association
  • Award ID - SAW-2013-IZW-2
  • Awardee - J Fickel
  • Funding body - Lundbeck Foundation
  • Award ID - R52-5062
  • Awardee - MTP Gilbert

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
23A8BC239545pigtail macaquepig-tailed macaqueMacaca nemestrina Description:not available
Alternative names:MNE
Common name:Southern pig-tailed macaque
...
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4EC500B54600 Celebes crested macaqueMacaca nigra Description:not available
Alternative names:MNI
Common name:Black crested macaque
...
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7228609122765silvered leaf monkeySilvery lutungTrachypithecus cristatus Description:not available
Alternative names:TCR
Common name:Silvered langur
...
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81A4F641272115  Presbytis mitrata Description:not available
Alternative names:PMI
Common name:Mitred surili
...
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941A685288029Hanuman langur Semnopithecus entellus Description:not available
Alternative names:SVE
Common name:Western purple-faced langur
...
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968B6C371046096  Presbytis melalophos melalophos Description:not available
Alternative names:PME
Common name:Sumatra surili
...
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A1CCF80890383 moor macaqueMacaca maura Description:not available
Alternative names:MMA
Common name:Moor macaque
...
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A8A42277222416  Trachypithecus auratus Description:not available
Alternative names:TAU
Common name:East Javan ebony langur
...
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AMNH 5468637029 leopard catPrionailurus bengalensis Description:not available
Alternative names:PBE
Common name:Leopard cat
...
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AMNH 5555461455 Asiatic golden catCatopuma temminckii Description:not available
Alternative names:CTE
Common name:Asian golden cat
...
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Displaying 1-10 of 70 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
OtherFASTQ9.44 MB2017-06-22
OtherBAM7.57 MB2017-06-22
KY117535OtherBAM1.06 MB2017-06-22
KY117535OtherFASTQ562.9 MB2017-06-22
KY117536OtherBAM508.19 KB2017-06-22
KY117536OtherFASTQ237.99 MB2017-06-22
KY117537OtherFASTQ348.88 MB2017-06-22
KY117537OtherBAM441.51 KB2017-06-22
KY117538OtherFASTQ431.34 MB2017-06-22
KY117538OtherBAM1.15 MB2017-06-22
Displaying 1-10 of 137 File(s).

History:

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