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Data released on December 08, 2017

Supporting data for "eHistology image and annotation data from the Kaufman Atlas of Mouse Development"

Baldock, R, A; Armit, C (2017): Supporting data for "eHistology image and annotation data from the Kaufman Atlas of Mouse Development" GigaScience Database. http://dx.doi.org/10.5524/100365 RIS BibTeX Text

“The Atlas of Mouse Development” by Kaufman is a classic paper atlas that is the de facto standard for the definition of mouse embryo anatomy in the context of standard histological images. We have re-digitised the original H&E stained tissue sections used for the book at high resolution and transferred the hand-drawn annotations to digital form. We have augmented the annotations with standard ontological assignments (EMAPA anatomy) and made the data freely available. The dataset captures and preserves the definitive anatomical knowledge of the original atlas, provides a core image set for deeper community annotation and teaching, and delivers a unique high-quality set of high-resolution histological images through mammalian development for manual and automated analysis.

Contact Submitter

Read the peer-reviewed publication(s):

Baldock, R. A., & Armit, C. (2017). eHistology image and annotation data from the Kaufman Atlas of Mouse Development. GigaScience, 7(2). doi:10.1093/gigascience/gix131

Additional information:

http://www.emouseatlas.org/emap/eHistology/

https://github.com/ma-tech/eHistologyWebapp

Keywords:

embryo mouse section atlas anatomy imaging 

Imaging

http://gigadb.org/images/data/cropped/100365.jpg

Funding:

  • Funding body - Medical Research Council
  • Comment - Human Genetics Unit Mouse Atlas Programme
  • Awardee - R A Baldock

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Kaufman: 8659A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E12-12.5 embryonic days
Life stage:Theiler stage:20
...
+
Kaufman: 8699A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E14.5 embryonic days
Life stage:Theiler stage:22,23
...
+
Kaufman: 8714810090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E12.5-13 embryonic days
Life stage:Theiler stage:21
...
+
Kaufman: 89192A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E13.5 embryonic days
Life stage:Theiler stage:22
...
+
Kaufman: 8919510090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E14.5 embryonic days
Life stage:Theiler stage:22,23
...
+
Kaufman: 89198A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E15.5 embryonic days
Life stage:Theiler stage:24
...
+
Kaufman: 8919910090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E16.5 embryonic days
Life stage:Theiler stage:25
...
+
Kaufman: 9011110090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E12.5-13 embryonic days
Life stage:Theiler stage:21
...
+
Kaufman: 9012310090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E14.5 embryonic days
Life stage:Theiler stage:22,23
...
+
Kaufman: 9016210090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E15.5 embryonic days
Life stage:Theiler stage:24
...
+
Displaying 1-10 of 50 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
Data Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDData TypeFile FormatSizeRelease Date 
GitHub archivearchive3.2 MB2017-10-16
Kaufman: D6.5.PM.CImageUNKNOWN0 KB2017-10-16
Kaufman: D6.5.PM.CImageUNKNOWN0 KB2017-10-16
Kaufman: D6.5.PM.BImageUNKNOWN0 KB2017-10-16
Kaufman: D6.5.PM.BImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Displaying 1-10 of 1035 File(s).

History:

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