Supporting data for "eHistology image and annotation data from the Kaufman Atlas of Mouse Development"

Dataset type: Imaging
Data released on December 08, 2017

Baldock RA; Armit C (2017): Supporting data for "eHistology image and annotation data from the Kaufman Atlas of Mouse Development" GigaScience Database. http://dx.doi.org/10.5524/100365

DOI10.5524/100365

“The Atlas of Mouse Development” by Kaufman is a classic paper atlas that is the de facto standard for the definition of mouse embryo anatomy in the context of standard histological images. We have re-digitised the original H&E stained tissue sections used for the book at high resolution and transferred the hand-drawn annotations to digital form. We have augmented the annotations with standard ontological assignments (EMAPA anatomy) and made the data freely available. The dataset captures and preserves the definitive anatomical knowledge of the original atlas, provides a core image set for deeper community annotation and teaching, and delivers a unique high-quality set of high-resolution histological images through mammalian development for manual and automated analysis.

Additional details

Read the peer-reviewed publication(s):

Baldock, R. A., & Armit, C. (2017). eHistology image and annotation data from the Kaufman Atlas of Mouse Development. GigaScience, 7(2). doi:10.1093/gigascience/gix131

Additional information:

http://www.emouseatlas.org/emap/eHistology/

https://github.com/ma-tech/eHistologyWebapp





Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Kaufman: 8659A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E12-12.5 embryonic days
Life stage:Theiler stage:20
...
+
Kaufman: 8699A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E14.5 embryonic days
Life stage:Theiler stage:22,23
...
+
Kaufman: 8714810090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E12.5-13 embryonic days
Life stage:Theiler stage:21
...
+
Kaufman: 89192A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E13.5 embryonic days
Life stage:Theiler stage:22
...
+
Kaufman: 8919510090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E14.5 embryonic days
Life stage:Theiler stage:22,23
...
+
Kaufman: 89198A10090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E15.5 embryonic days
Life stage:Theiler stage:24
...
+
Kaufman: 8919910090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E16.5 embryonic days
Life stage:Theiler stage:25
...
+
Kaufman: 9011110090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E12.5-13 embryonic days
Life stage:Theiler stage:21
...
+
Kaufman: 9012310090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E14.5 embryonic days
Life stage:Theiler stage:22,23
...
+
Kaufman: 9016210090Mousehouse mouseMus musculus Description:Embryonic mouse specimen at Theiler st...
Age:E15.5 embryonic days
Life stage:Theiler stage:24
...
+
Displaying 1-10 of 50 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
GitHub archivearchive3.2 MB2017-10-16
Kaufman: D6.5.PM.CImageUNKNOWN0 KB2017-10-16
Kaufman: D6.5.PM.CImageUNKNOWN0 KB2017-10-16
Kaufman: D6.5.PM.BImageUNKNOWN0 KB2017-10-16
Kaufman: D6.5.PM.BImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Kaufman: D8.2.15.4AImageUNKNOWN0 KB2017-10-16
Displaying 1-10 of 1035 File(s).
Funding body Awardee Award ID Comments
Medical Research Council R A Baldock Human Genetics Unit Mouse Atlas Programme
Date Action
December 8, 2017 Dataset publish
January 9, 2018 Manuscript Link added : 10.1093/gigascience/gix131
January 12, 2018 File Licenses added