Supporting data for "The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation"

Dataset type: Genomic, Transcriptomic, Metagenomic
Data released on July 31, 2018

Liu C; Zhang Y; Ren Y; Wang H; Li S; Jiang F; Yin L; Qiao X; Zhang G; Qian W; Liu B; Fan W (2018): Supporting data for "The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation" GigaScience Database. http://dx.doi.org/10.5524/100485

DOI10.5524/100485

The golden apple snail (Pomacea canaliculata) is a fresh water snail listed among the top-100 worst invasive species, worldwide and a noted agricultural and quarantine pest that causes great economic losses. It is characterized by fast growth, strong stress tolerance, a high reproduction rate, and adaptation to a broad range of environments.
Here, we used long-read sequencing to produce a 440-Mb high-quality chromosome-level assembly for the P. canaliculata genome. In total, 50 Mb (11.4%) repeat sequences and 21,533 gene models were identified in the genome. The major findings of this study include the recent explosion of DNA/hAT-Charlie transposable elements (TEs), the expansion of the P450 gene family and the constitution of the cellular homeostasis system, which contributes to ecological plasticity in stress adaptation. In addition, the high transcriptional levels of perivitellin genes in the ovary and albumen gland promote the function of nutrient supply and defence ability in eggs. Furthermore, the gut metagenome also contains diverse genes for food digestion and xenobiotic degradation.

Additional details

Additional information:

https://github.com/fanagislab/common_use

Accessions (data included in GigaDB):

BioProject: PRJNA427478





Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
AMG_1749906  gut metagenome Description:environmental DNA extracted from the i...
Analyte type:eDNA
Alternative accession-BioSample:SAMN08364411
...
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AMG_2749906  gut metagenome Description:environmental DNA extracted from the i...
Analyte type:eDNA
Alternative accession-BioSample:SAMN08364412
...
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AMG_3749906  gut metagenome Isolate:biologilca replicate 2
Description:environmental DNA extracted from the i...
Analyte type:eDNA
...
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AMG_4749906  gut metagenome Alternative names:apple snail
Description:environmental DNA extracted from the i...
Analyte type:eDNA
...
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AMG_5749906  gut metagenome Description:environmental DNA extracted from the i...
Analyte type:eDNA
Alternative accession-BioSample:SAMN08364415
...
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AMG_6749906  gut metagenome Description:environmental DNA extracted from the i...
Analyte type:eDNA
Alternative accession-BioSample:SAMN08364416
...
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Cd1400727  Pomacea canaliculata Collected by:Conghui Li
Description:Transcriptomics of the Pomacea canalic...
Analyte type:RNA
...
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Cd2400727  Pomacea canaliculata Environment (feature):paddy field [ENVO:00000297]
Description:Transcriptomics of the Pomacea canalic...
Analyte type:RNA
...
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Cd3400727  Pomacea canaliculata Alternative names:apple snail
Description:Transcriptomics of the Pomacea canalic...
Analyte type:RNA
...
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De1400727  Pomacea canaliculata Isolate:SZHN2017
Description:Transcriptomics of the Pomacea canalic...
Analyte type:RNA
...
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Displaying 1-10 of 40 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Tabular DataUNKNOWN168.11 MB2018-07-24
Tabular DataUNKNOWN7.2 KB2018-07-24
Tabular DataUNKNOWN9.72 KB2018-07-24
Tabular DataUNKNOWN17.82 KB2018-07-24
Tabular DataUNKNOWN32.09 KB2018-07-24
Tabular DataUNKNOWN67.97 KB2018-07-24
Tabular DataUNKNOWN0.84 KB2018-07-24
Tabular DataUNKNOWN7.02 KB2018-07-24
Tabular DataUNKNOWN73.68 KB2018-07-24
Tabular DataUNKNOWN0.77 KB2018-07-24
Displaying 1-10 of 54 File(s).
Funding body Awardee Award ID Comments
MOST W Fan 2016YFC1200600 National key research and development program of China
Shenzhen government W Fan JCYJ20150630165133395 Shenzhen science and technology program
Shenzhen government W Fan ZDSYS20141118170111640 Fund of Key Laboratory of Shenzhen
Chinese Academy of Agricultural Sciences(CAAS) W Fan Agricultural Science and Technology Innovation Program (ASTIP)
Chinese Academy of Agricultural Sciences(CAAS) W Fan Elite Youth Program
Date Action
July 31, 2018 Dataset publish