Data supporting the 1000 plant (1KP) transcriptomes initiative
Dataset type: Transcriptomic
Data released on October 23, 2019
Carpenter EJ; Matasci N; Ayyampalayam S; Wu S; Sun J; Yu J; Jimenez Vieira FR; Bowler C; Dorrell RG; Gitzendanner MA; Li L; Du W; Ullrich K; Wickett NJ; Barkmann TJ; Barker MS; Leebens-Mack JH; Wong GK (2019): Data supporting the 1000 plant (1KP) transcriptomes initiative GigaScience Database. http://dx.doi.org/10.5524/100627
The 1000 Plants (1KP) transcriptomes initiative explored the genetic diversity of green plants (Viridiplantae) by sequencing RNA from 1,342 samples representing 1,173 species. All of the analyses done for the 1KP capstone, and previous studies on subsets of these data, are based on a series of de novo transcriptome assemblies and related outputs that will be described in the accompanying GigaScience publication. We also describe assessments of the data quality and an analysis to remove cross-contamination between the samples. These data will be useful to researchers with interests in specific gene families, either across the green plant tree of life or in more focused lineages.
Additional details
Read the peer-reviewed publication(s):
(PubMed: 31644802)
Related datasets:
doi:10.5524/100627 IsPreviousVersionOf doi:10.5524/100910 (It is a more recent version of this dataset)
There is a new version of this dataset available at: DOI: 10.5524/100910
Accessions (data generated as part of this study):
BioProject:
PRJEB4921
BioProject:
PRJEB8056
BioProject:
PRJEB21674
STUDY:
SRP012845
BioProject:
PRJNA163187
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
AALA | 400539 | Meliosma cuneifolia | Description:RNA extracted from leaves of Meliosma ... Analyte type:RNA Tissue:leaf [BTO:0000713] ... + | ||
ABCD | 71396 | Racomitrium elongatum | Description:RNA extracted from gametophyte of Niph... Analyte type:RNA Tissue:gametophyte [BTO:0000495] ... + | ||
ABEH | 1799584 | Heliotropium greggii | Description:RNA extracted from mature leaf of Heli... Analyte type:RNA Tissue:leaf [BTO:0000713] ... + | ||
ABIJ | 59777 | Selaginella lepidophylla | Description:RNA extracted from Young fronds of Sel... Analyte type:RNA Tissue:frond [BTO:0000483] ... + | ||
ABSS | 46945 | white sassafras | Sassafras albidum | Description:RNA extracted from young leaves of Sas... Analyte type:RNA Tissue:juvenile leaf [BTO:0003147] ... + | |
ACFP | 83906 | Chinese silk-plant | Boehmeria nivea | Description:RNA extracted from shoot apex includin... Analyte type:RNA Tissue:shoot apex [PO:0000037] ... + | |
ACWS | 56990 | Agathis macrophylla | Description:RNA extracted from Young Leaf of Agath... Analyte type:RNA Tissue:juvenile leaf [BTO:0003147] ... + | ||
ACYX | 33128 | Flanders poppy | Papaver rhoeas | Description:RNA extracted from leaf of Papaver rho... Analyte type:RNA Tissue:leaf [BTO:0000713] ... + | |
ADHK | 55362 | Galax urceolata | Description:RNA extracted from leaves - diploid of... Analyte type:RNA Tissue:leaf [BTO:0000713] ... + | ||
AEKF | 102169 | Penium margaritaceum | Description:RNA extracted from algal cells of Peni... Analyte type:RNA Tissue:Algae [NCIT:C86587] ... + |