Genomic data of the Anna's Hummingbird (Calypte anna).

Dataset type: Genomic
Data released on April 24, 2014

Zhang G; Li B; Li C; Gilbert MTP; Mello CV; Jarvis ED; The Avian Genome Consortium ; Wang J (2014): Genomic data of the Anna's Hummingbird (Calypte anna). GigaScience Database.


The Anna's Hummingbird (Calypte anna (Lesson, 1829)) is a medium-sized hummingbird native to the west coast of North America and is the only North American hummingbird species with a red crown. It belongs to one of the rare groups of vocal learning birds. The bird was named after Anna Massena, Duchess of Rivoli.
These data have been produced as part of the G10K and Avian Phylogenomics Project. DNA was collected from from a female, which was caught in Portland, Oregan, USA by Claudio Mello and Pete Lovell. We sequenced the 1 Gb genome to a depth of approximately 110X with short reads from a series of libraries with various insert sizes (170bp, 500bp, 800bp, 2kb, 5kb, 10kb and 20kb).
The assembled scaffolds of high quality sequences total 1.1Gb, with the contig and scaffold N50 values of 23 kb and 4Mb respectively. We identified 16,000 protein-coding genes with a mean length of 18.5kb.

Additional details

Read the peer-reviewed publication(s):

Related datasets:

doi:10.5524/101004 IsSupplementTo doi:10.5524/101000

Accessions (data generated as part of this study):

BioProject: PRJNA212866
SRA: SRP028275


Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Annas hummingbird -A99244Annas hummingbirdAnnas hummingbirdCalypte anna Source material identifiers:Erich Jarvis & Claudio...
Estimated genome size:1
Funding source:BGI
Displaying 1-1 of 1 Sample(s).

File NameSample IDData TypeFile FormatSizeRelease Date 
Annas hummingbird -A9Coding sequenceFASTA6.66 MB2014-04-24
Annas hummingbird -A9Sequence assemblyFASTA317.18 MB2014-04-24
Annas hummingbird -A9AnnotationGFF1.65 MB2014-04-24
Annas hummingbird -A9Protein sequenceFASTA4.34 MB2014-04-24
Annas hummingbird -A9Repeat sequenceUNKNOWN9.56 MB2014-04-24
Displaying 1-5 of 5 File(s).
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