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Data released on April 25, 2014

Genomic data of the American Crow (Corvus brachyrhynchos).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the American Crow (Corvus brachyrhynchos). GigaScience Database. RIS BibTeX Text

The American Crow (Corvus brachyrhynchos brachyrhynchos (Brehm, 1822)) is a large passerine bird and part of the Corvidae family. It is commonly found throughout North America, and despite being common and widespread, they are highly susceptible to West Nile Virus.
These data have been produced as part of the G10K and Avian Phylogenomics Project. DNA was collected from a female in the Asheboro, North Carolina Zoo, USA, with blood samples provided by Halley Buckanoff of the zoo. We sequenced the 1.26Gb genome to a depth of approximately 80X with short reads from a series of libraries with various insert sizes (170bp, 500bp, 800bp, 2kb, 5kb, 10kb and 20kb).
The assembled scaffolds of high quality sequences total 1.1Gb, with the contig and scaffold N50 values of 24kb and 6.9Mb respectively. We identified 16,562 protein-coding genes with a mean length of 17.9kb.

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Related manuscripts:


Related datasets:

doi:10.5524/101008 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212867
SRA: SRP028286



Samples: Table Settings


Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
American crow-10-058285066American CrowAmerican CrowCorvus brachyrhynchos Source material identifiers:Erich Jarvis
Estimated genome size:1.26
Funding source:BGI
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings


File Description
Sample ID
Data Type
File Format
Release Date
Download Link
File Attributes

File NameSample IDData TypeFile FormatSizeRelease Date 
American crow-10-0582Coding sequenceFASTA6.79 MB2014-04-25
American crow-10-0582Sequence assemblyFASTA312.14 MB2014-04-25
American crow-10-0582AnnotationGFF1.69 MB2014-04-25
American crow-10-0582Protein sequenceFASTA4.42 MB2014-04-25
American crow-10-0582Repeat sequenceUNKNOWN9.32 MB2014-04-25
Displaying 1-5 of 5 File(s).

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