Genomic data of the Golden-collared Manakin (Manacus vitellinus).
Dataset type: Genomic
Data released on April 26, 2014
Zhang G; Li B; Li C; Gilbert MTP; Schlinger B; Jarvis ED; The Avian Genome Consortium ; Wang J (2014): Genomic data of the Golden-collared Manakin (Manacus vitellinus). GigaScience Database. http://dx.doi.org/10.5524/101010
The Golden-collared Manakin (Manacus vitellinus (Gould, 1843)) belongs to the Pipridae family of suboscine passseriform birds. It is commonly found in Colombia, Costa Rica and Panama.
These data have been produced as part of the G10K and Avian Phylogenomics Project. DNA was collected from a male obtained in Gamboa, Panama, with the sample obtained by Barney Schlinger of UCLA. We sequenced the genome to a depth of approximately 110X with short reads from a series of libraries with various insert sizes (170bp, 500bp, 800bp, 2kb, 5kb, 10kb and 20kb).
The assembled scaffolds of high quality sequences total 1.12Gb, with the contig and scaffold N50 values of 34kb and 2.5Mb respectively. We identified 15,285 protein-coding genes with a mean length of 18.8kb.
Additional details
Read the peer-reviewed publication(s):
Related datasets:
doi:10.5524/101010 IsSupplementTo doi:10.5524/101000
Accessions (data generated as part of this study):
BioProject:
PRJNA212872
SRA:
SRP028393
Projects:
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
Golden-collared Manakin | 328815 | Golden-collared Manakin | Golden-collared Manakin | Manacus vitellinus | Source material identifiers:Erich Jarvis Estimated genome size:unknown size Funding source:BGI ... + |