Genomic data of the White throated tinamou (Tinamus guttatus).

Dataset type: Genomic
Data released on April 30, 2014

Zhang G; Li B; Li C; Gilbert MTP; Jarvis ED; The Avian Genome Consortium ; Wang J (2014): Genomic data of the White throated tinamou (Tinamus guttatus). GigaScience Database. http://dx.doi.org/10.5524/101014

DOI10.5524/101014

The White-throated Tinamou (Tinamus guttatus (Pelzeln, 1863)) is a native bird to the Amazon rain forest in Brazil, southern Venezuela, eastern Peru, northern Bolivia, southeastern Colombia and northeastern Ecuador. It belongs to the Tinamidae family, and eats fruit off the ground or low-lying bushes, as well as flower buds, invertebrates, seeds and leaves.
These data have been produced as part of the G10K and Avian Phylogenomics Project. DNA was collected from a vouchered tissue sample (B-42614) from the Louisiana State University Museum, of a female caught in Loreto, Peru.in the Loreto Department, Peru. We sequenced the genome to a depth of approximately 100X with short reads from a series of libraries with various insert sizes (170bp, 500bp, 800bp, 2kb, 5kb, 10kb and 20kb).
The assembled scaffolds of high quality sequences total 1.05Gb, with the contig and scaffold N50 values of 24kb and 242kb respectively. We identified 15,773 protein-coding genes with a mean length of 14.7kb

Additional details

Read the peer-reviewed publication(s):

Zhang, G., Li, B., Li, C., Gilbert, M. T. P., Jarvis, E. D., & Wang, J. (2014). Comparative genomic data of the Avian Phylogenomics Project. GigaScience, 3(1). doi:10.1186/2047-217x-3-26
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., … Meredith, R. W. (2014). Comparative genomics reveals insights into avian genome evolution and adaptation. Science, 346(6215), 1311–1320. doi:10.1126/science.1251385
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., … Howard, J. T. (2014). Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 346(6215), 1320–1331. doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101014 IsSupplementTo doi:10.5524/101000

Accessions (data generated as part of this study):

BioProject: PRJNA212876
SRA: SRP028753

Projects:







Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Tinamus-B-4261494827White throated tinamouTinamus guttatus Source material identifiers:Erich Jarvis
Estimated genome size:unknown size
Funding source:BGI
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Displaying 1-1 of 1 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Tinamus-B-42614Coding sequenceUNKNOWN6.17 MB2014-04-30
Tinamus-B-42614Sequence assemblyFASTA309.53 MB2014-04-30
Tinamus-B-42614AnnotationGFF1.53 MB2014-04-30
Tinamus-B-42614Protein sequenceFASTA4 MB2014-04-30
Tinamus-B-42614OtherUNKNOWN6.3 MB2014-04-30
Displaying 1-5 of 5 File(s).
Date Action
October 12, 2015 File Tinamus_guttatus.fa.gz updated
October 14, 2015 File Tinamus_guttatus. updated
October 14, 2015 File Tinamus_guttatus. updated