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Data released on April 30, 2014

Genomic data of the White throated tinamou (Tinamus guttatus).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the White throated tinamou (Tinamus guttatus). GigaScience Database. http://dx.doi.org/10.5524/101014 RIS BibTeX Text

The White-throated Tinamou (Tinamus guttatus (Pelzeln, 1863)) is a native bird to the Amazon rain forest in Brazil, southern Venezuela, eastern Peru, northern Bolivia, southeastern Colombia and northeastern Ecuador. It belongs to the Tinamidae family, and eats fruit off the ground or low-lying bushes, as well as flower buds, invertebrates, seeds and leaves.
These data have been produced as part of the G10K and Avian Phylogenomics Project. DNA was collected from a vouchered tissue sample (B-42614) from the Louisiana State University Museum, of a female caught in Loreto, Peru.in the Loreto Department, Peru. We sequenced the genome to a depth of approximately 100X with short reads from a series of libraries with various insert sizes (170bp, 500bp, 800bp, 2kb, 5kb, 10kb and 20kb).
The assembled scaffolds of high quality sequences total 1.05Gb, with the contig and scaffold N50 values of 24kb and 242kb respectively. We identified 15,773 protein-coding genes with a mean length of 14.7kb

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Related manuscripts:

doi:10.1186/2047-217X-3-26
doi:10.1126/science.1251385
doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101014 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212876
SRA: SRP028753

Projects:



Genomic

http://gigadb.org/images/data/cropped/bird/tinamus_major.png

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Tinamus-B-4261494827White throated tinamouTinamus guttatus Source material identifiers:Erich Jarvis
Estimated genome size:unknown size
Funding source:BGI
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Tinamus-B-42614Coding sequenceUNKNOWN6.17 MB2014-04-30
Tinamus-B-42614Sequence assemblyFASTA309.53 MB2014-04-30
Tinamus-B-42614AnnotationGFF1.53 MB2014-04-30
Tinamus-B-42614Protein sequenceFASTA4 MB2014-04-30
Tinamus-B-42614OtherUNKNOWN6.3 MB2014-04-30
Displaying 1-5 of 5 File(s).

History:

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