Genomic data of the Bar-tailed trogon (Apaloderma vittatum).

Dataset type: Genomic
Data released on May 02, 2014

Zhang G; Li B; Li C; Gilbert MTP; Jarvis ED; The Avian Genome Consortium ; Wang J (2014): Genomic data of the Bar-tailed trogon (Apaloderma vittatum). GigaScience Database.


The Bar-tailed trogon (Apaloderma vittatum (Shelley, 1882)) belongs to the Trogonidae family of birds and lives in forests at a preferred altitude of around 1600 metres, and who's vocalisations are described "a yelping crescendo". It is found in several African countries - Angola, Burundi, Cameroon, Democratic Republic of the Congo, Equatorial Guinea, and Kenya, to name a few.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a vouchered tissue sample (Cat# 140150) from the Natural History Museum of Denmark, of a male collected in the Udzungwa mountains of Tanzania. We sequenced the genome to a depth of approximately 28X.
The assembled scaffolds of high quality sequences total 1.08Gb, with the contig and scaffold N50 values of 19kb and 56kb respectively. We identified 13,615 protein-coding genes with a mean length of 13.5kb.

Additional details

Read the peer-reviewed publication(s):

Related datasets:

doi:10.5524/101016 IsSupplementTo doi:10.5524/101000

Accessions (data generated as part of this study):

BioProject: PRJNA212878
SRA: SRP028834


Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Bar-tailed trogon- TG657397Bar-tailed trogonApaloderma vittatum Source material identifiers:Tom Gilbert
Estimated genome size:unknown size
Funding source:BGI
Displaying 1-1 of 1 Sample(s).

File NameSample IDData TypeFile FormatSizeRelease Date 
Bar-tailed trogon- TG6Coding sequenceFASTA5.19 MB2014-05-02
Bar-tailed trogon- TG6Sequence assemblyFASTA322.44 MB2014-05-02
Bar-tailed trogon- TG6AnnotationGFF1.29 MB2014-05-02
Bar-tailed trogon- TG6Protein sequenceFASTA3.38 MB2014-05-02
Bar-tailed trogon- TG6OtherUNKNOWN7.74 MB2014-05-02
Displaying 1-5 of 5 File(s).
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