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Data released on May 08, 2014

Genomic data of the Javan rhinoceros hornbill (Buceros rhinoceros silvestris).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the Javan rhinoceros hornbill (Buceros rhinoceros silvestris). GigaScience Database. http://dx.doi.org/10.5524/101018 RIS BibTeX Text

The Javan Rhinoceros Hornbill (Buceros rhinoceros silvestris (Vieillot, 1816)) is a sub species of the Rhinoceros Hornbill (Buceros rhinoceros), one of the world's largest hornbills that has lived in captivity for over 90 years. It is found it lowland and tropical and sub-tropical mountain rainforests in Borneo, Sumatra, Java, the Malay Peninsula, Singapore and southern Thailand. It is also the state bird of the Malaysian state Sarawak.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a male who had lived at the Copenhagen Zoo (originally born wild) in Denmark, of an animal tended to by Mads Bertelsen. We sequenced the genome to a depth of approximately 35X.
The assembled scaffolds of high quality sequences total 1.08Gb, with the contig and scaffold N50 values of 14kb and 51kb respectively. We identified 13,873 protein-coding genes with a mean length of 13.5kb.

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Related manuscripts:

doi:10.1186/2047-217X-3-26
doi:10.1126/science.1251385
doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101018 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212887
SRA: SRP028845

Projects:



Genomic

http://gigadb.org/images/data/cropped/101018.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Javan rhinoceros hornbill -TG18175836Javan rhinoceros hornbillBuceros rhinoceros silvestris Source material identifiers:Tom Gilbert
Estimated genome size:unknown size
Funding source:BGI
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Javan rhinoceros hornbill -TG18Coding sequenceFASTA5.37 MB2014-05-08
Javan rhinoceros hornbill -TG18Sequence assemblyFASTA325.68 MB2014-05-08
Javan rhinoceros hornbill -TG18AnnotationGFF1.33 MB2014-05-08
Javan rhinoceros hornbill -TG18Protein sequenceFASTA3.5 MB2014-05-08
Javan rhinoceros hornbill -TG18OtherUNKNOWN9.77 MB2014-05-08
Displaying 1-5 of 5 File(s).

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