Help Login Create account

Data released on May 10, 2014

Genomic data of the Macqueen's Bustard (Chlamydotis macqueenii).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the Macqueen's Bustard (Chlamydotis macqueenii). GigaScience Database. http://dx.doi.org/10.5524/101022 RIS BibTeX Text

The Macqueen's Bustard (Chlamydotis macqueenii (Gray, 1832)) is a large bird that breeds in southwest Asia in deserts and similarly arid sandy areas. It has recently split as a separate species from the Houbara Bustard of the Canary Islands and Africa, and one difference is that the MacQueen's Bustard has a tendancy to wander compared with the Houbara.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a male in the Dubai Falcon Hospital (originally wild caught), with blood samples provided by Tom Bailey of the Hospital. We sequenced the genome to a depth of approximately 27X.
The assembled scaffolds of high quality sequences total 1.09Gb, with the contig and scaffold N50 values of 18kb and 45kb respectively. We identified 13,582 protein-coding genes with a mean length of 12.9kb.

Contact Submitter

Related manuscripts:

doi:10.1186/2047-217X-3-26
doi:10.1126/science.1251385
doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101022 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212891
SRA: SRP028950

Projects:



Genomic

http://gigadb.org/images/data/cropped/101022.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Macqueens Bustard -TG14187382Macqueens BustardChlamydotis undulata macqueenii Source material identifiers:Tom Gilbert
Estimated genome size:unknown size
Funding source:BGI
...
+
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Macqueens Bustard -TG14Coding sequenceFASTA5.22 MB2014-05-10
Macqueens Bustard -TG14Sequence assemblyFASTA324.79 MB2014-05-10
Macqueens Bustard -TG14AnnotationGFF1.28 MB2014-05-10
Macqueens Bustard -TG14Protein sequenceFASTA3.4 MB2014-05-10
Macqueens Bustard -TG14Repeat sequenceUNKNOWN7.54 MB2014-05-10
Displaying 1-5 of 5 File(s).

Other datasets you might like: