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Data released on May 16, 2014

Genomic data of the Northern Carmine bee-eater (Merops nubicus).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the Northern Carmine bee-eater (Merops nubicus). GigaScience Database. http://dx.doi.org/10.5524/101029 RIS BibTeX Text

The Northern Carmine Bee-eater (Merops nubicus nubicus (Gmelin, 1788)) is part of the bee-eater family, Meropidae, and is also known as the Nubian bee-eater. It is a brightly-coloured bird and feeds primarily on bees and other flying insects, such as grasshoppers and locusts.
These data have been produced as part of the Aavian pPhylogenomiscs Pproject. DNA was collected from a female from the Copenhagen Zoo in Denmark, of an animal tended by Mads Bertelsen; now vouchered (137942) in the Natural History Museum of Denmark. We sequenced the genome to a depth of approximately 37X.
The assembled scaffolds of high quality sequences total 1.06Gb, with the contig and scaffold N50 values of 20kb and 47kb respectively. We identified 13,467 protein-coding genes with a mean length of 13kb.

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Related manuscripts:

doi:10.1186/2047-217X-3-26
doi:10.1126/science.1251385
doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101029 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212898
SRA: SRP029278

Projects:



Genomic

http://gigadb.org/images/data/cropped/bird/merops_nubicus.png

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Northern Carmine bee-eater - TG357421Northern Carmine bee-eaterMerops nubicus Source material identifiers:Tom Gilbert
Estimated genome size:unknown size
Funding source:BGI
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Northern Carmine bee-eater - TG3Coding sequenceFASTA5.03 MB2014-02-07
Northern Carmine bee-eater - TG3Sequence assemblyFASTA314.54 MB2014-02-07
Northern Carmine bee-eater - TG3AnnotationGFF1.25 MB2014-02-07
Northern Carmine bee-eater - TG3Protein sequenceFASTA3.28 MB2014-02-07
Northern Carmine bee-eater - TG3Repeat sequenceUNKNOWN7.48 MB2014-02-07
Displaying 1-5 of 5 File(s).

History:

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