Genomic data of the Brown mesite (Mesitornis unicolor).

Dataset type: Genomic
Data released on May 16, 2014

Zhang G; Li B; Li C; Gilbert MTP; Jarvis ED; The Avian Genome Consortium ; Wang J (2014): Genomic data of the Brown mesite (Mesitornis unicolor). GigaScience Database.


The Brown Mesite (Mesitornis unicolor (Des Murs, 1845)) is a ground-dwelling bird native to Madagascar, and is one of three species of the Mesitornithidae family. It is a medium-sized terrestial bird that inhabits humid forests and prefers lower elevations - making it a vunerable population.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a vouchered sample (345610) of the Chicago Field Museum (via David Williard) in Chicago from a female caught in Fivondronana de Tolagnaro, Toliara, Madagascar. We sequenced the genome to a depth of approximately 29X.
The assembled scaffolds of high quality sequences total 1.1Gb, with the contig and scaffold N50 values of 18kb and 46kb respectively. We identified 15,371 protein-coding genes with a mean length of 11.4kb.

Additional details

Read the peer-reviewed publication(s):

Related datasets:

doi:10.5524/101030 IsSupplementTo doi:10.5524/101000

Accessions (data generated as part of this study):

BioProject: PRJNA212899
SRA: SRP029309


Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Brown mesite -34561054374Brown mesitebrown roateloMesitornis unicolor Source material identifiers:Erich Jarvis & Tom Gil...
Estimated genome size:unknown size
Funding source:BGI
Displaying 1-1 of 1 Sample(s).

File NameSample IDData TypeFile FormatSizeRelease Date 
Brown mesite -345610Coding sequenceFASTA5.49 MB2014-02-07
Brown mesite -345610Sequence assemblyFASTA326.36 MB2014-02-07
Brown mesite -345610AnnotationGFF1.36 MB2014-02-07
Brown mesite -345610Protein sequenceFASTA3.57 MB2014-02-07
Brown mesite -345610Repeat sequenceUNKNOWN7.98 MB2014-02-07
Displaying 1-5 of 5 File(s).
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