Help Login Create account

Data released on May 16, 2014

Genomic data of the Brown mesite (Mesitornis unicolor).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the Brown mesite (Mesitornis unicolor). GigaScience Database. http://dx.doi.org/10.5524/101030 RIS BibTeX Text

The Brown Mesite (Mesitornis unicolor (Des Murs, 1845)) is a ground-dwelling bird native to Madagascar, and is one of three species of the Mesitornithidae family. It is a medium-sized terrestial bird that inhabits humid forests and prefers lower elevations - making it a vunerable population.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a vouchered sample (345610) of the Chicago Field Museum (via David Williard) in Chicago from a female caught in Fivondronana de Tolagnaro, Toliara, Madagascar. We sequenced the genome to a depth of approximately 29X.
The assembled scaffolds of high quality sequences total 1.1Gb, with the contig and scaffold N50 values of 18kb and 46kb respectively. We identified 15,371 protein-coding genes with a mean length of 11.4kb.

Contact Submitter

Read the peer-reviewed publication(s):

Zhang, G., Li, B., Li, C., Gilbert, M. T. P., Jarvis, E. D., & Wang, J. (2014). Comparative genomic data of the Avian Phylogenomics Project. GigaScience, 3(1). doi:10.1186/2047-217x-3-26
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., … Meredith, R. W. (2014). Comparative genomics reveals insights into avian genome evolution and adaptation. Science, 346(6215), 1311–1320. doi:10.1126/science.1251385
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., … Howard, J. T. (2014). Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 346(6215), 1320–1331. doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101030 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212899
SRA: SRP029309

Projects:



Genomic

http://gigadb.org/images/data/cropped/101030.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Brown mesite -34561054374Brown mesitebrown roateloMesitornis unicolor Source material identifiers:Erich Jarvis & Tom Gil...
Estimated genome size:unknown size
Funding source:BGI
...
+
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
Data Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDData TypeFile FormatSizeRelease Date 
Brown mesite -345610Coding sequenceFASTA5.49 MB2014-02-07
Brown mesite -345610Sequence assemblyFASTA326.36 MB2014-02-07
Brown mesite -345610AnnotationGFF1.36 MB2014-02-07
Brown mesite -345610Protein sequenceFASTA3.57 MB2014-02-07
Brown mesite -345610Repeat sequenceUNKNOWN7.98 MB2014-02-07
Displaying 1-5 of 5 File(s).

Other datasets you might like: