Genomic data of the Brown mesite (Mesitornis unicolor).

Dataset type: Genomic
Data released on May 16, 2014

Zhang G; Li B; Li C; Gilbert MTP; Jarvis ED; The Avian Genome Consortium ; Wang J (2014): Genomic data of the Brown mesite (Mesitornis unicolor). GigaScience Database. http://dx.doi.org/10.5524/101030

DOI10.5524/101030

The Brown Mesite (Mesitornis unicolor (Des Murs, 1845)) is a ground-dwelling bird native to Madagascar, and is one of three species of the Mesitornithidae family. It is a medium-sized terrestial bird that inhabits humid forests and prefers lower elevations - making it a vunerable population.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a vouchered sample (345610) of the Chicago Field Museum (via David Williard) in Chicago from a female caught in Fivondronana de Tolagnaro, Toliara, Madagascar. We sequenced the genome to a depth of approximately 29X.
The assembled scaffolds of high quality sequences total 1.1Gb, with the contig and scaffold N50 values of 18kb and 46kb respectively. We identified 15,371 protein-coding genes with a mean length of 11.4kb.

Additional details

Read the peer-reviewed publication(s):

Zhang, G., Li, B., Li, C., Gilbert, M. T. P., Jarvis, E. D., & Wang, J. (2014). Comparative genomic data of the Avian Phylogenomics Project. GigaScience, 3(1). doi:10.1186/2047-217x-3-26
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., … Meredith, R. W. (2014). Comparative genomics reveals insights into avian genome evolution and adaptation. Science, 346(6215), 1311–1320. doi:10.1126/science.1251385
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., … Howard, J. T. (2014). Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 346(6215), 1320–1331. doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101030 IsSupplementTo doi:10.5524/101000

Accessions (data generated as part of this study):

BioProject: PRJNA212899
SRA: SRP029309

Projects:







Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Brown mesite -34561054374Brown mesitebrown roateloMesitornis unicolor Source material identifiers:Erich Jarvis & Tom Gil...
Estimated genome size:unknown size
Funding source:BGI
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Displaying 1-1 of 1 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Brown mesite -345610Coding sequenceFASTA5.49 MB2014-02-07
Brown mesite -345610Sequence assemblyFASTA326.36 MB2014-02-07
Brown mesite -345610AnnotationGFF1.36 MB2014-02-07
Brown mesite -345610Protein sequenceFASTA3.57 MB2014-02-07
Brown mesite -345610Repeat sequenceUNKNOWN7.98 MB2014-02-07
Displaying 1-5 of 5 File(s).
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