Help Login Create account

Data released on May 21, 2014

Genomic data of the Yellow-throated sandgrouse (Pterocles gutturalis).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the Yellow-throated sandgrouse (Pterocles gutturalis). GigaScience Database. http://dx.doi.org/10.5524/101037 RIS BibTeX Text

The Yellow-throated Sandgrouse (Pterocles gutturalis saturatior (Hartert, 1900)) is a member of the Pteroclididae family (ground dwelling birds restricted to treeless, open country) and can be found in many countries in southern and eastern Africa.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a male at the Sharjah Breeding Center in the United Arab Emirates tended by An Pas, of a wild caught animal in Tanzania. We sequenced the genome to a depth of approximately 25X.
The assembled scaffolds of high quality sequences total 1.07Gb, with the contig and scaffold N50 values of 17kb and 49kb respectively. We identified 13,867 protein-coding genes with a mean length of 12.8kb.

Contact Submitter

Related manuscripts:

doi:10.1186/2047-217X-3-26
doi:10.1126/science.1251385
doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101037 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212906
SRA: SRP029347

Projects:



Genomic

http://gigadb.org/images/data/cropped/101037.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Yellow-throated sandgrouse -TG16240206Yellow-throated sandgrouseYellow-throated sandgrousePterocles gutturalis Source material identifiers:Tom Gilbert
Estimated genome size:unknown size
Funding source:BGI
...
+
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Yellow-throated sandgrouse -TG16Coding sequenceFASTA5.23 MB2014-02-07
Yellow-throated sandgrouse -TG16Sequence assemblyFASTA319.63 MB2014-02-07
Yellow-throated sandgrouse -TG16AnnotationGFF1.29 MB2014-02-07
Yellow-throated sandgrouse -TG16Protein sequenceFASTA3.41 MB2014-02-07
Yellow-throated sandgrouse -TG16Repeat sequenceUNKNOWN6.4 MB2014-02-07
Displaying 1-5 of 5 File(s).

Other datasets you might like: