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Data released on May 21, 2014

Genomic data of the Angola turaco (Tauraco erythrolophus).

Gilbert, M, P; Jarvis, E, D; Li, B; Li, C; The Avian Genome Consortium, ; Wang, J; Zhang, G (2014): Genomic data of the Angola turaco (Tauraco erythrolophus). GigaScience Database. http://dx.doi.org/10.5524/101038 RIS BibTeX Text

The Red-crested Turaco (Tauraco erythrolophus (Vieillot, 1819)) is a group of African near-passerines endemic to western Angola. It's call has been described to be somewhat like a jungle monkey.
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a male (leg band LDF577) who lived at the Copenhagen Zoo in Denmark, of an animal tended to by Mads Bertelsen. We sequenced the genome to a depth of approximately 30X.
The assembled scaffolds of high quality sequences total 1.17Gb, with the contig and scaffold N50 values of 18kb and 55kb respectively. We identified 15,435 protein-coding genes with a mean length of 13.2kb.

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Related manuscripts:

doi:10.1186/2047-217X-3-26
doi:10.1126/science.1251385
doi:10.1126/science.1253451

Related datasets:

doi:10.5524/101038 IsSupplementTo doi:10.5524/101000

Accessions (data included in GigaDB):

BioProject: PRJNA212908
SRA: SRP029348

Projects:



Genomic

http://gigadb.org/images/data/cropped/bird/tauraco_erythrolophus.png

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Angola turaco -TG12121530Angola turacored-crested turacoTauraco erythrolophus Source material identifiers:Tom Gilbert
Estimated genome size:unknown size
Funding source:BGI
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Angola turaco -TG12Coding sequenceFASTA5.65 MB2014-02-07
Angola turaco -TG12Sequence assemblyFASTA348.01 MB2014-02-07
Angola turaco -TG12AnnotationGFF1.39 MB2014-02-07
Angola turaco -TG12Protein sequenceFASTA3.66 MB2014-02-07
Angola turaco -TG12Repeat sequenceUNKNOWN7.97 MB2014-02-07
Displaying 1-5 of 5 File(s).

History:

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