Genomic data of Chamaecrista fasciculata

Dataset type: Genomic, Transcriptomic
Data released on July 23, 2018

Chamaecrista fasciculata (C. fasciculata) ,known as partridge pea, is a model non-papilionoid legume.It forms root nodules (by crack entry), but its sister genus, Senna, does not. The genus Chamaecrista contains over 300 species .Chamaecrista fasciculata is native to the eastern United States. DNA was collected from leaves of 2-month-old C. fasciculata plants grown in a growth chamber. We sequenced the genome to a depth of approximately 692X. The assembled scaffolds of high quality sequences total 429MB, with the contig and scaffold N50 values of 14kb and 96kb respectively. We identified 32,832 protein-coding genes with a mean length of 1.317kb.


Additional details

Read the peer-reviewed publication(s):

Griesmann, M., Chang, Y., Liu, X., Song, Y., Haberer, G., Crook, M. B., … Cheng, S. (2018). Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. Science, eaat1743. doi:10.1126/science.aat1743

Related datasets:

doi:10.5524/101045 IsSupplementTo doi:10.5524/100300

Accessions (data generated as part of this study):

BioProject: PRJNA374770


Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Chamaecrista_fasciculata genome53854golden cassia Chamaecrista fasciculata Description:DNA extracted from leaf of Chamaecrist...
Analyte type:DNA
Project name:International Consortium on Evolution...
Displaying 1-1 of 1 Sample(s).

File NameSample IDData TypeFile FormatSizeRelease Date 
Chamaecrista_fasciculata genomeCoding sequenceFASTA42.62 MB2018-06-01
Chamaecrista_fasciculata genomeSequence assemblyFASTA410.62 MB2018-06-01
otherFASTA9.04 MB2018-06-01
otherGFF3.12 MB2018-06-01
otherFASTA3.1 MB2018-06-01
otherFASTA971.38 KB2018-06-01
otherUNKNOWN5.86 MB2018-06-01
Chamaecrista_fasciculata genomeAnnotationGFF13.25 MB2018-06-01
Chamaecrista_fasciculata genomeProtein sequenceFASTA14.54 MB2018-06-01
otherFASTA4.53 MB2018-06-01
Displaying 1-10 of 12 File(s).
Date Action
July 23, 2018 Dataset publish
February 6, 2019 Manuscript Link added : 10.1126/science.aat1743