Datisca glomerata (D. glomerata) is a nodulating species belonging to the Cucurbitales. Datisca is nodulated by Frankia bacteria. Actinorhizal Cucurbitales have a distinct nodule structure and infection mechanism, different from that in actinorhizal Rosales or Fagale. We collected DNA from greenhouse-grown plants leaves. We sequenced the genome to a depth of approximately 261X. The assembled scaffolds of high quality sequences total 688MB, with the contig and scaffold N50 values of 89kb and 1,186kb respectively. We identified 37,042 protein-coding genes with a mean length of 1.013kb.

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Additional details

Related datasets:

doi:10.5524/101046 IsSupplementTo doi:10.5524/100300

Accessions (data generated as part of this study):

BioProject: PRJNA374770

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Datisca_glomerata genome34297  Datisca glomerata Description:DNA extracted from leaf of Datisca glo...
Analyte type:DNA
Project name:International Consortium on Evolution...
...
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Datisca_glomerata leaf RNA34297  Datisca glomerata Description:RNA extracted from leaf of Datisca glo...
Analyte type:RNA
Project name:International Consortium on Evolution...
...
+
Datisca_glomerata nodule RNA34297  Datisca glomerata Description:RNA extracted from root nodule of Dati...
Analyte type:RNA
Project name:International Consortium on Evolution...
...
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Datisca_glomerata root RNA34297  Datisca glomerata Description:RNA extracted from root of Datisca glo...
Analyte type:RNA
Project name:International Consortium on Evolution...
...
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Displaying 1-4 of 4 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
otherTEXT34.98 KB2018-06-01
otherFASTA37.1 MB2018-06-01
otherFASTA2.28 MB2018-06-01
otherGFF1.05 MB2018-06-01
otherFASTA816.64 KB2018-06-01
otherFASTA411.9 KB2018-06-01
otherUNKNOWN5.81 MB2018-06-01
otherGFF13.84 MB2018-06-01
otherFASTA12.72 MB2018-06-01
otherFASTA5.07 MB2018-06-01
Displaying 1-10 of 47 File(s).
Date Action
July 23, 2018 Dataset publish