Genomic data of Dryas drummondii
Dataset type: Genomic, Transcriptomic
Data released on July 23, 2018
Griesmann M; Chang Y; Liu X; Song Y; Haberer G; Crook MB; Billault-Penneteau B; Lauressergues D; Keller J; Imanishi L; Roswanjaya YP; Kohlen W; Pujic P; Battenberg K; Alloisio N; Liang Y; Hilhorst H; Salgado MG; Hocher V; Gherbi H; Svistoonoff S; Doyle JJ; He S; Xu Y; Xu S; Qu J; Gao Q; Fang X; Fu Y; Normand P; Berry AM; Wall LG; Ané J; Pawlowski K; Xu X; Yang H; Spannag M; X Mayer KF; Wong GK; Parniske M; Delaux P; Cheng S (2018): Genomic data of Dryas drummondii GigaScience Database. http://dx.doi.org/10.5524/101047
Dryas drummondii (D. drummondii) is a nodulating species belonging to the Rosales order. It is nodulated by Frankia bacteria. DNA was collected from leaves of different plants grown in the greenhouse. We sequenced the genome to a depth of approximately 777X. The assembled scaffolds of high quality sequences total 233MB, with the contig and scaffold N50 values of 35kb and 979kb respectively. We identified 25,030 protein-coding genes with a mean length of 1.350kb.
Additional details
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doi:10.5524/101047 IsSupplementTo doi:10.5524/100300
Accessions (data generated as part of this study):
BioProject:
PRJNA374770
Projects:
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
Dryas_drummondii genome | 48231 | Dryas drummondii | Description:DNA extracted from seeds of Dryas drum... Analyte type:DNA Project name:International Consortium on Evolution... ... + | ||
Dryas_drummondii RNA | 48231 | Dryas drummondii | Description:RNA extracted from leaf of Dryas drumm... Analyte type:RNA Project name:International Consortium on Evolution... ... + |