Genomic data of Nissolia schottii
Dataset type: Genomic, Transcriptomic
Data released on July 23, 2018
Griesmann M; Chang Y; Liu X; Song Y; Haberer G; Crook MB; Billault-Penneteau B; Lauressergues D; Keller J; Imanishi L; Roswanjaya YP; Kohlen W; Pujic P; Battenberg K; Alloisio N; Liang Y; Hilhorst H; Salgado MG; Hocher V; Gherbi H; Svistoonoff S; Doyle JJ; He S; Xu Y; Xu S; Qu J; Gao Q; Fang X; Fu Y; Normand P; Berry AM; Wall LG; Ané J; Pawlowski K; Xu X; Yang H; Spannag M; X Mayer KF; Wong GK; Parniske M; Delaux P; Cheng S (2018): Genomic data of Nissolia schottii GigaScience Database. http://dx.doi.org/10.5524/101050
The genus Nissolia contains 13 species. Nissolia is closely related to Chaetocalyx, which also contains 13 species; Together, these two genera appear to represent a unique loss of nodulation within the dalbergioid clade of the legumes. Nissolia schottii is native to México and the southwestern United States. Unlike most legumes, it is a climbing liana. It was also known as belonging to the only clade that lost nodulation in the Papilionoidae legumes. DNA was collected from young leaves,a one-year old plant, and frozen in liquid nitrogen. We sequenced the genome to a depth of approximately 305X. The assembled scaffolds of high quality sequences total 466MB, with the contig and scaffold N50 values of 20kb and 179kb respectively. We identified 36,369 protein-coding genes with a mean length of 1.211kb.
Additional details
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Related datasets:
doi:10.5524/101050 IsSupplementTo doi:10.5524/100300
Accessions (data generated as part of this study):
BioProject:
PRJNA374770
Projects:
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
Nissolia_schottii genome | 105944 | Nissolia schottii | Description:DNA extracted from leaf of Nissolia sc... Analyte type:DNA Project name:International Consortium on Evolution... ... + | ||
Nissolia_schottii RNA | 105944 | Nissolia schottii | Description:RNA extracted from Nissolia schottii Analyte type:RNA Project name:International Consortium on Evolution... ... + |