Genomic data of the Apple-Ring Acacia (Faidherbia albida)

Dataset type: Genomic, Transcriptomic
Data released on October 16, 2018

Faidherbia albida is an agriculturally, biologically, medicinally and economically important African orphan crop. It is a thorny tree growing up 6–30 m (20–98 ft) tall and 2 m (6.6 ft) in trunk diameter. Its deep-penetrating tap root makes it highly resistant to drought. The bark is grey, and fissured when old. There are 11,000 seeds/kg. Wikipedia includes in its list of uses; flowers are important in raising bees; seed pods important for raising livestock and as food sources for camel, elephant, antelope, buffalo, baboons and others; Ashes of the wood are used in making soap and as a depilatory and tanning agent for hides; Wood is used for canoes, mortars, and pestles, and carving; the thorny branches useful for a natural barbed fence.
Here we present draft genome information of Faidherbia albida. The assembled genome of Faidherbia albida is 654 Mb, and we predict 28979 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.

Additional details

Read the peer-reviewed publication(s):


Related datasets:

doi:10.5524/101054 IsPartOf doi:10.5524/100504

Additional information:

www.africanorphancrops.org

Accessions (data generated as part of this study):

BioProject: PRJNA453822

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Faidherbia_albida_dry_seed138055  Faidherbia albida Description:RNA extracted from dry seed of Faidher...
Alternative names:apple-ring acacia
Alternative accession-BioSample:SAMN08991390
...
+
Faidherbia_albida_leaf138055  Faidherbia albida Description:Genomic DNA extracted from leaf of a F...
Alternative names:apple-ring acacia
Alternative accession-BioSample:SAMN08991339
...
+
Faidherbia_albida_leaf_bud138055  Faidherbia albida Description:RNA extracted from leaf bud of Faidher...
Alternative names:apple-ring acacia
Alternative accession-BioSample:SAMN08991391
...
+
Faidherbia_albida_stem138055  Faidherbia albida Description:RNA extracted from stem of Faidherbia ...
Alternative names:apple-ring acacia
Alternative accession-BioSample:SAMN08991392
...
+
Faidherbia_albida_young_leaf138055  Faidherbia albida Description:RNA extracted from young leaf of Faidh...
Alternative names:apple-ring acacia
Alternative accession-BioSample:SAMN08991393
...
+
Displaying 1-5 of 5 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
Coding SequenceFASTA34.65 MB2018-08-20
Repeat sequenceGFF113.19 MB2018-08-20
otherarchive51.32 MB2018-08-20
Sequence assemblyFASTA624.54 MB2018-08-20
annotationGFF14.04 MB2018-08-20
annotationGFF21.17 KB2018-08-20
protein sequenceFASTA11.95 MB2018-08-20
otherarchive14.43 MB2018-08-20
annotationGFF167.54 KB2018-08-20
annotationGFF375.24 KB2018-08-20
Displaying 1-10 of 16 File(s).
Funding body Awardee Award ID Comments
Shenzhen Municipal Government of China No. JCYJ20150831201643396
Shenzhen Municipal Government of China No. JCYJ20150529150409546
State Key Laboratory of Agricultural Genomics No. 2011DQ782025
Guangdong Provincial Key Laboratory of Genome Read and Write No. 2017B030301011
Date Action
October 16, 2018 Dataset publish
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_dry_seed
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_leaf_bud
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_stem
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
November 12, 2018 Sample Attribute added : of Sample Faidherbia_albida_young_leaf
February 6, 2019 Manuscript Link added : 10.1093/gigascience/giy152