Genomic data of the Bambara Groundnut (Vigna subterranea)

Dataset type: Genomic, Transcriptomic
Data released on October 16, 2018

Vigna subterranea is an agriculturally, biologically, medicinally and economically important African orphan crop. Bambara Groundnut grows well any where groundnut (peanut) grows and so is vastly present from Kwara state and throughout the northern parts of Nigeria.
Wikipedia states that the Bambara groundnut represents the third most important grain legume in semi-arid Africa. It is resistant to high temperature and is suitable for marginal soils where other leguminous crops cannot be grown. Wikipedia includes in its list of uses; the seeds are used for food and beverages; the entire plant is known for soil improvement; in West Africa, the nuts are eaten as a snack, roasted and salted, processed into cake, or as a meal, boiled similar to other beans.
Here we present draft genome information of Vigna subterranea. The assembled genome of Vigna subterranea is 535 Mb, and we predict 31707 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.

Additional details

Read the peer-reviewed publication(s):

Chang, Y., Liu, H., Liu, M., Liao, X., Sahu, S. K., Fu, Y., … Liu, X. (2018). The draft genomes of five agriculturally important African orphan crops. GigaScience, 8(3). doi:10.1093/gigascience/giy152

Related datasets:

doi:10.5524/101055 IsPartOf doi:10.5524/100504

Additional information:

www.africanorphancrops.org

Projects:






Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Vigna_subterranea_leaf115715Bambara groundnut Vigna subterranea Description:Genomic DNA extracted from leaf of a V...
Alternative names:bambara groundnut
Alternative accession-BioSample:SAMN09356022
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Vigna_subterranea_semi mature leaf115715Bambara groundnut Vigna subterranea Description:RNA extracted from semi mature leaf of...
Alternative names:bambara groundnut
Alternative accession-BioSample:SAMN09356030
...
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Vigna subterranea_whole_stem115715Bambara groundnut Vigna subterranea Description:RNA extracted from whole stem of Vigna...
Alternative names:bambara groundnut
Alternative accession-BioSample:SAMN09356031
...
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Vigna_subterranea_young leaf115715Bambara groundnut Vigna subterranea Description:RNA extracted from young leaf of Vigna...
Alternative names:bambara groundnut
Alternative accession-BioSample:SAMN09356032
...
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Displaying 1-4 of 4 Sample(s).




File NameSample IDData TypeFile FormatSizeRelease Date 
ReadmeTEXT1.15 KB2018-08-20
Coding SequenceFASTA36.6 MB2018-08-20
Repeat sequenceGFF75.42 MB2018-08-20
otherarchive55.4 MB2018-08-20
Sequence assemblyFASTA511.67 MB2018-08-20
annotationGFF15.12 MB2018-08-20
annotationGFF16.76 KB2018-08-20
protein sequenceFASTA12.67 MB2018-08-20
otherarchive15.41 MB2018-08-20
annotationGFF176.42 KB2018-08-20
Displaying 1-10 of 15 File(s).
Funding body Awardee Award ID Comments
Shenzhen Municipal Government of China No. JCYJ20150831201643396
Shenzhen Municipal Government of China No. JCYJ20150529150409546
State Key Laboratory of Agricultural Genomics No. 2011DQ782025
Guangdong Provincial Key Laboratory of Genome Read and Write No. 2017B030301011
Date Action
October 16, 2018 Dataset publish
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_young leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna_subterranea_semi mature leaf
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
November 12, 2018 Sample Attribute added : of Sample Vigna subterranea_whole_stem
February 6, 2019 Manuscript Link added : 10.1093/gigascience/giy152